Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
MSH3P20585 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MSH3P20585 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
MSH3P20585 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.39■□□□□ 0.54
MSH3P20585 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.39■□□□□ 0.54
MSH3P20585 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH3P20585 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH3P20585 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
MSH3P20585 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH3P20585 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH3P20585 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MSH3P20585 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH3P20585 RN7SL850P-201ENST00000579959 291 ntBASIC18.39■□□□□ 0.53
MSH3P20585 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH3P20585 AL031432.5-201ENST00000641059 760 ntBASIC18.39■□□□□ 0.53
MSH3P20585 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MSH3P20585 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH3P20585 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH3P20585 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 AC112777.1-201ENST00000540175 1423 ntBASIC18.39■□□□□ 0.53
MSH3P20585 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
MSH3P20585 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH3P20585 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH3P20585 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH3P20585 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
MSH3P20585 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.38■□□□□ 0.53
MSH3P20585 TMPOP1-202ENST00000424642 1267 ntBASIC18.38■□□□□ 0.53
MSH3P20585 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH3P20585 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.38■□□□□ 0.53
MSH3P20585 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.38■□□□□ 0.53
MSH3P20585 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
MSH3P20585 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.38■□□□□ 0.53
MSH3P20585 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH3P20585 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 HOXB1-202ENST00000577092 1414 ntBASIC18.38■□□□□ 0.53
MSH3P20585 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH3P20585 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH3P20585 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH3P20585 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.38■□□□□ 0.53
MSH3P20585 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
MSH3P20585 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
MSH3P20585 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.37■□□□□ 0.53
MSH3P20585 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.37■□□□□ 0.53
MSH3P20585 AC139887.4-201ENST00000607877 719 ntBASIC18.37■□□□□ 0.53
MSH3P20585 AC024243.1-201ENST00000609234 778 ntBASIC18.37■□□□□ 0.53
MSH3P20585 AL023973.1-201ENST00000624619 620 ntBASIC18.37■□□□□ 0.53
MSH3P20585 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.37■□□□□ 0.53
MSH3P20585 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH3P20585 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms