Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL2A1P02458 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL2A1P02458 AL138831.2-201ENST00000606564 490 ntBASIC21.54■■□□□ 1.04
COL2A1P02458 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.54■■□□□ 1.04
COL2A1P02458 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.54■■□□□ 1.04
COL2A1P02458 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL2A1P02458 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.54■■□□□ 1.04
COL2A1P02458 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL2A1P02458 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL2A1P02458 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL2A1P02458 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.54■■□□□ 1.04
COL2A1P02458 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL2A1P02458 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL2A1P02458 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL2A1P02458 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL2A1P02458 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL2A1P02458 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL2A1P02458 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL2A1P02458 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.53■■□□□ 1.04
COL2A1P02458 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.53■■□□□ 1.04
COL2A1P02458 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.52■■□□□ 1.04
COL2A1P02458 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL2A1P02458 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.52■■□□□ 1.04
COL2A1P02458 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.52■■□□□ 1.04
COL2A1P02458 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL2A1P02458 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21.52■■□□□ 1.04
COL2A1P02458 RNA5SP419-201ENST00000515908 135 ntBASIC21.52■■□□□ 1.04
COL2A1P02458 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC21.52■■□□□ 1.04
COL2A1P02458 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.52■■□□□ 1.04
COL2A1P02458 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL2A1P02458 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
COL2A1P02458 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL2A1P02458 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL2A1P02458 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL2A1P02458 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.52■■□□□ 1.04
COL2A1P02458 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
COL2A1P02458 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
COL2A1P02458 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL2A1P02458 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL2A1P02458 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL2A1P02458 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL2A1P02458 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL2A1P02458 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL2A1P02458 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.03
COL2A1P02458 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC21.52■■□□□ 1.03
COL2A1P02458 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.52■■□□□ 1.03
COL2A1P02458 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.52■■□□□ 1.03
COL2A1P02458 AC068472.1-201ENST00000474589 881 ntBASIC21.52■■□□□ 1.03
COL2A1P02458 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
COL2A1P02458 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL2A1P02458 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
COL2A1P02458 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.51■■□□□ 1.03
COL2A1P02458 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.51■■□□□ 1.03
COL2A1P02458 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.51■■□□□ 1.03
COL2A1P02458 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.51■■□□□ 1.03
COL2A1P02458 HLA-A-201ENST00000376802 1334 ntBASIC21.51■■□□□ 1.03
COL2A1P02458 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.51■■□□□ 1.03
COL2A1P02458 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
COL2A1P02458 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.51■■□□□ 1.03
COL2A1P02458 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC21.51■■□□□ 1.03
COL2A1P02458 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL2A1P02458 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.51■■□□□ 1.03
COL2A1P02458 AL499627.1-201ENST00000569373 2188 ntBASIC21.51■■□□□ 1.03
COL2A1P02458 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
COL2A1P02458 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
COL2A1P02458 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.5■■□□□ 1.03
COL2A1P02458 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 LINC01126-201ENST00000623515 1646 ntBASIC21.5■■□□□ 1.03
COL2A1P02458 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.5■■□□□ 1.03
COL2A1P02458 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL2A1P02458 KRT18P65-201ENST00000439811 1286 ntBASIC21.5■■□□□ 1.03
COL2A1P02458 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.5■■□□□ 1.03
COL2A1P02458 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
COL2A1P02458 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL2A1P02458 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL2A1P02458 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.49■■□□□ 1.03
COL2A1P02458 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
COL2A1P02458 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms