Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.93■□□□□ 0.78
RNF40O75150 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.93■□□□□ 0.78
RNF40O75150 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF40O75150 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
RNF40O75150 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
RNF40O75150 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF40O75150 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
RNF40O75150 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF40O75150 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF40O75150 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
RNF40O75150 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF40O75150 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF40O75150 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
RNF40O75150 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.92■□□□□ 0.78
RNF40O75150 FAM87A-204ENST00000613235 858 ntBASIC19.92■□□□□ 0.78
RNF40O75150 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF40O75150 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF40O75150 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.91■□□□□ 0.78
RNF40O75150 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.91■□□□□ 0.78
RNF40O75150 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.91■□□□□ 0.78
RNF40O75150 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.91■□□□□ 0.78
RNF40O75150 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
RNF40O75150 AL512353.2-201ENST00000448759 1962 ntBASIC19.91■□□□□ 0.78
RNF40O75150 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
RNF40O75150 PRORSD1P-202ENST00000563365 2154 ntBASIC19.91■□□□□ 0.78
RNF40O75150 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
RNF40O75150 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
RNF40O75150 RCC2P6-201ENST00000526625 1557 ntBASIC19.91■□□□□ 0.78
RNF40O75150 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 PHGDH-210ENST00000641115 1638 ntBASIC19.91■□□□□ 0.78
RNF40O75150 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF40O75150 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
RNF40O75150 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
RNF40O75150 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.9■□□□□ 0.78
RNF40O75150 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.9■□□□□ 0.78
RNF40O75150 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.9■□□□□ 0.78
RNF40O75150 AC011298.2-201ENST00000617989 482 ntBASIC19.9■□□□□ 0.78
RNF40O75150 AC130371.2-201ENST00000619443 611 ntBASIC19.9■□□□□ 0.78
RNF40O75150 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
RNF40O75150 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RNF40O75150 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
RNF40O75150 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF40O75150 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
RNF40O75150 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
RNF40O75150 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.89■□□□□ 0.77
RNF40O75150 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RNF40O75150 AK4P3-201ENST00000418260 669 ntBASIC19.89■□□□□ 0.77
RNF40O75150 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.89■□□□□ 0.77
RNF40O75150 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms