Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC104390.1-201ENST00000555663 520 ntBASIC17.39■□□□□ 0.37
LDB3O75112 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.39■□□□□ 0.37
LDB3O75112 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.39■□□□□ 0.37
LDB3O75112 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.39■□□□□ 0.37
LDB3O75112 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
LDB3O75112 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LDB3O75112 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDB3O75112 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 FAM210CP-201ENST00000445714 574 ntBASIC17.38■□□□□ 0.37
LDB3O75112 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.38■□□□□ 0.37
LDB3O75112 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.38■□□□□ 0.37
LDB3O75112 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.38■□□□□ 0.37
LDB3O75112 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.38■□□□□ 0.37
LDB3O75112 AL031432.5-201ENST00000641059 760 ntBASIC17.38■□□□□ 0.37
LDB3O75112 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
LDB3O75112 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDB3O75112 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.38■□□□□ 0.37
LDB3O75112 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.37■□□□□ 0.37
LDB3O75112 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
LDB3O75112 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.37■□□□□ 0.37
LDB3O75112 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LDB3O75112 AC009113.1-201ENST00000570267 2443 ntBASIC17.37■□□□□ 0.37
LDB3O75112 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
LDB3O75112 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LDB3O75112 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
LDB3O75112 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.37■□□□□ 0.37
LDB3O75112 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
LDB3O75112 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.37■□□□□ 0.37
LDB3O75112 AC010240.3-201ENST00000607688 395 ntBASIC17.37■□□□□ 0.37
LDB3O75112 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.37■□□□□ 0.37
LDB3O75112 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.37■□□□□ 0.37
LDB3O75112 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LDB3O75112 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.37■□□□□ 0.37
LDB3O75112 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDB3O75112 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.36■□□□□ 0.37
LDB3O75112 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.36■□□□□ 0.37
LDB3O75112 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.36■□□□□ 0.37
LDB3O75112 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms