Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN3O15551 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.19■□□□□ 0.82
CLDN3O15551 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 AL031133.1-201ENST00000406807 723 ntBASIC20.19■□□□□ 0.82
CLDN3O15551 AL671277.2-201ENST00000458060 996 ntBASIC20.19■□□□□ 0.82
CLDN3O15551 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.19■□□□□ 0.82
CLDN3O15551 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CLDN3O15551 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN3O15551 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CLDN3O15551 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CLDN3O15551 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CLDN3O15551 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 MYLKP1-201ENST00000509077 1580 ntBASIC20.18■□□□□ 0.82
CLDN3O15551 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
CLDN3O15551 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN3O15551 AC009065.1-201ENST00000564055 1225 ntBASIC20.18■□□□□ 0.82
CLDN3O15551 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.18■□□□□ 0.82
CLDN3O15551 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.18■□□□□ 0.82
CLDN3O15551 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.18■□□□□ 0.82
CLDN3O15551 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN3O15551 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN3O15551 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 AL163051.1-201ENST00000569214 1512 ntBASIC20.17■□□□□ 0.82
CLDN3O15551 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.17■□□□□ 0.82
CLDN3O15551 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN3O15551 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.17■□□□□ 0.82
CLDN3O15551 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CLDN3O15551 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN3O15551 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
CLDN3O15551 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.17■□□□□ 0.82
CLDN3O15551 HYMAI.1-201ENST00000620949 238 ntBASIC20.17■□□□□ 0.82
CLDN3O15551 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN3O15551 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN3O15551 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN3O15551 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.17■□□□□ 0.82
CLDN3O15551 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
CLDN3O15551 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.16■□□□□ 0.82
CLDN3O15551 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.16■□□□□ 0.82
CLDN3O15551 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN3O15551 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN3O15551 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 LINC01311-201ENST00000565162 1445 ntBASIC20.16■□□□□ 0.82
CLDN3O15551 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 NEFHP1-201ENST00000412845 2629 ntBASIC20.16■□□□□ 0.82
CLDN3O15551 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLDN3O15551 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN3O15551 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CLDN3O15551 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN3O15551 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN3O15551 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CLDN3O15551 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CLDN3O15551 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.15■□□□□ 0.82
CLDN3O15551 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CLDN3O15551 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.15■□□□□ 0.82
CLDN3O15551 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN3O15551 AC092597.1-201ENST00000487352 616 ntBASIC20.15■□□□□ 0.82
CLDN3O15551 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.15■□□□□ 0.82
CLDN3O15551 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.15■□□□□ 0.82
CLDN3O15551 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms