Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CACNA1AO00555 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.32■□□□□ 0.36
CACNA1AO00555 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.32■□□□□ 0.36
CACNA1AO00555 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CACNA1AO00555 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.32■□□□□ 0.36
CACNA1AO00555 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CACNA1AO00555 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CACNA1AO00555 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CACNA1AO00555 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.31■□□□□ 0.36
CACNA1AO00555 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.31■□□□□ 0.36
CACNA1AO00555 SPDYE22P-201ENST00000582158 798 ntBASIC17.31■□□□□ 0.36
CACNA1AO00555 LINC02560-201ENST00000596379 459 ntBASIC17.31■□□□□ 0.36
CACNA1AO00555 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.31■□□□□ 0.36
CACNA1AO00555 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.31■□□□□ 0.36
CACNA1AO00555 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.31■□□□□ 0.36
CACNA1AO00555 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.31■□□□□ 0.36
CACNA1AO00555 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.31■□□□□ 0.36
CACNA1AO00555 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.31■□□□□ 0.36
CACNA1AO00555 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.31■□□□□ 0.36
CACNA1AO00555 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 AC005593.1-201ENST00000624894 515 ntBASIC17.31■□□□□ 0.36
CACNA1AO00555 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CACNA1AO00555 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.3■□□□□ 0.36
CACNA1AO00555 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.3■□□□□ 0.36
CACNA1AO00555 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.3■□□□□ 0.36
CACNA1AO00555 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.3■□□□□ 0.36
CACNA1AO00555 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.3■□□□□ 0.36
CACNA1AO00555 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.3■□□□□ 0.36
CACNA1AO00555 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.3■□□□□ 0.36
CACNA1AO00555 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CACNA1AO00555 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.3■□□□□ 0.36
CACNA1AO00555 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.3■□□□□ 0.36
CACNA1AO00555 AC113404.2-201ENST00000507884 177 ntBASIC17.3■□□□□ 0.36
CACNA1AO00555 MIR6727-201ENST00000620702 65 ntBASIC17.3■□□□□ 0.36
CACNA1AO00555 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 Z98882.1-201ENST00000622160 2253 ntBASIC17.3■□□□□ 0.36
CACNA1AO00555 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CACNA1AO00555 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CACNA1AO00555 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CACNA1AO00555 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.3■□□□□ 0.36
CACNA1AO00555 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.29■□□□□ 0.36
CACNA1AO00555 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.29■□□□□ 0.36
CACNA1AO00555 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CACNA1AO00555 AC034236.2-201ENST00000606662 1610 ntBASIC17.29■□□□□ 0.36
CACNA1AO00555 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.29■□□□□ 0.36
CACNA1AO00555 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.29■□□□□ 0.36
CACNA1AO00555 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CACNA1AO00555 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.29■□□□□ 0.36
CACNA1AO00555 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CACNA1AO00555 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.29■□□□□ 0.36
CACNA1AO00555 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.29■□□□□ 0.36
CACNA1AO00555 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CACNA1AO00555 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.29■□□□□ 0.36
CACNA1AO00555 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CACNA1AO00555 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.28■□□□□ 0.36
CACNA1AO00555 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.28■□□□□ 0.36
CACNA1AO00555 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CACNA1AO00555 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.28■□□□□ 0.36
CACNA1AO00555 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CACNA1AO00555 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.28■□□□□ 0.36
CACNA1AO00555 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.28■□□□□ 0.36
CACNA1AO00555 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms