Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC85CA6NKD9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC85CA6NKD9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC85CA6NKD9 AC009237.14-201ENST00000609975 1594 ntBASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 NME2P1-201ENST00000426182 414 ntBASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 AC023141.5-201ENST00000458585 616 ntBASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC85CA6NKD9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 AC055876.3-201ENST00000431496 288 ntBASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 HCG4B-203ENST00000450128 991 ntBASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 AC138649.4-201ENST00000612222 287 ntBASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 AC006333.2-201ENST00000607957 2099 ntBASIC20.38■□□□□ 0.85
CCDC85CA6NKD9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 FAM207CP-201ENST00000443486 507 ntBASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 AC068472.1-201ENST00000474589 881 ntBASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 AC105339.1-204ENST00000636249 355 ntBASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC85CA6NKD9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC85CA6NKD9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 AC034236.2-201ENST00000606662 1610 ntBASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC85CA6NKD9 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms