Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 POR-209ENST00000439269 1858 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 AC008406.3-201ENST00000620001 1374 ntBASIC13.16□□□□□ -0.3
LINC01549A6NIU2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.16□□□□□ -0.3
LINC01549A6NIU2 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 AC046158.3-201ENST00000624947 2558 ntBASIC13.16□□□□□ -0.3
LINC01549A6NIU2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01549A6NIU2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 AL121761.2-201ENST00000598007 1648 ntBASIC13.15□□□□□ -0.3
LINC01549A6NIU2 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 KRT18P16-201ENST00000510337 1294 ntBASIC13.15□□□□□ -0.3
LINC01549A6NIU2 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01549A6NIU2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.15□□□□□ -0.31
LINC01549A6NIU2 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
LINC01549A6NIU2 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
LINC01549A6NIU2 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
LINC01549A6NIU2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
LINC01549A6NIU2 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.15□□□□□ -0.31
LINC01549A6NIU2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 OR10C1-204ENST00000622521 1039 ntBASIC13.14□□□□□ -0.31
LINC01549A6NIU2 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01549A6NIU2 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 AC068338.2-201ENST00000563278 1430 ntBASIC13.13□□□□□ -0.31
LINC01549A6NIU2 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.13□□□□□ -0.31
LINC01549A6NIU2 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms