Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MIR4674-201ENST00000582457 87 ntBASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 LINC02084-201ENST00000606069 1096 ntBASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 RCC2P3-201ENST00000418112 1537 ntBASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC24.95■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 UNC93B2-201ENST00000285383 730 ntBASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 GPAT2P1-201ENST00000444924 1672 ntBASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AK4P3-201ENST00000418260 669 ntBASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AL357033.4-201ENST00000617703 1807 ntBASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AR-207ENST00000612010 3896 ntTSL 5 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC24.92■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms