Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 EMD-201ENST00000369835 966 ntTSL 3 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 MOK-208ENST00000519058 917 ntTSL 2 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 AC064862.7-201ENST00000604520 867 ntBASIC23.47■■□□□ 1.35
USP42Q9H9J4 AL773604.1-201ENST00000617417 272 ntBASIC23.47■■□□□ 1.35
USP42Q9H9J4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP42Q9H9J4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP42Q9H9J4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP42Q9H9J4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP42Q9H9J4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC23.46■■□□□ 1.35
USP42Q9H9J4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC23.46■■□□□ 1.35
USP42Q9H9J4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP42Q9H9J4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP42Q9H9J4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP42Q9H9J4 AL353692.3-201ENST00000407031 1396 ntBASIC23.46■■□□□ 1.35
USP42Q9H9J4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP42Q9H9J4 KRT89P-201ENST00000620027 1478 ntBASIC23.46■■□□□ 1.35
USP42Q9H9J4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.35
USP42Q9H9J4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
USP42Q9H9J4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 KRT18P13-201ENST00000400056 1290 ntBASIC23.45■■□□□ 1.34
USP42Q9H9J4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC23.45■■□□□ 1.34
USP42Q9H9J4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 BX323043.1-201ENST00000641006 1765 ntBASIC23.45■■□□□ 1.34
USP42Q9H9J4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP42Q9H9J4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.44■■□□□ 1.34
USP42Q9H9J4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC23.44■■□□□ 1.34
USP42Q9H9J4 CYP51A1P1-201ENST00000492267 1507 ntBASIC23.44■■□□□ 1.34
USP42Q9H9J4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC23.44■■□□□ 1.34
USP42Q9H9J4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC23.44■■□□□ 1.34
USP42Q9H9J4 IRX1P1-201ENST00000438849 1838 ntBASIC23.44■■□□□ 1.34
USP42Q9H9J4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP42Q9H9J4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP42Q9H9J4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP42Q9H9J4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP42Q9H9J4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USP42Q9H9J4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC23.44■■□□□ 1.34
USP42Q9H9J4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC23.44■■□□□ 1.34
USP42Q9H9J4 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP42Q9H9J4 AL161938.1-201ENST00000569833 2180 ntBASIC23.44■■□□□ 1.34
USP42Q9H9J4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USP42Q9H9J4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
USP42Q9H9J4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP42Q9H9J4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USP42Q9H9J4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USP42Q9H9J4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP42Q9H9J4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 BNIP3P18-201ENST00000593976 575 ntBASIC23.43■■□□□ 1.34
USP42Q9H9J4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP42Q9H9J4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
USP42Q9H9J4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USP42Q9H9J4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 KRT18P67-201ENST00000432816 1264 ntBASIC23.42■■□□□ 1.34
USP42Q9H9J4 FAM197Y8-203ENST00000450145 560 ntBASIC23.42■■□□□ 1.34
USP42Q9H9J4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC23.42■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms