Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM4Q9C037 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM4Q9C037 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM4Q9C037 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM4Q9C037 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM4Q9C037 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TRIM4Q9C037 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM4Q9C037 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 AC141586.5-201ENST00000624546 2050 ntBASIC18.46■□□□□ 0.55
TRIM4Q9C037 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 UNC93B2-201ENST00000285383 730 ntBASIC18.46■□□□□ 0.55
TRIM4Q9C037 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 KRT126P-201ENST00000549467 1181 ntBASIC18.46■□□□□ 0.55
TRIM4Q9C037 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 NAPSB-206ENST00000562112 1266 ntBASIC18.46■□□□□ 0.55
TRIM4Q9C037 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM4Q9C037 KRT18P22-201ENST00000402024 1347 ntBASIC18.46■□□□□ 0.55
TRIM4Q9C037 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM4Q9C037 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.46■□□□□ 0.54
TRIM4Q9C037 CYP2D8P-201ENST00000433633 1490 ntBASIC18.46■□□□□ 0.54
TRIM4Q9C037 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.45■□□□□ 0.54
TRIM4Q9C037 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 AL358472.4-201ENST00000633140 710 ntBASIC18.45■□□□□ 0.54
TRIM4Q9C037 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TRIM4Q9C037 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM4Q9C037 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM4Q9C037 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM4Q9C037 AC073508.3-201ENST00000619697 1419 ntBASIC18.44■□□□□ 0.54
TRIM4Q9C037 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM4Q9C037 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM4Q9C037 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM4Q9C037 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM4Q9C037 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms