Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 AL353135.1-201ENST00000606729 504 ntBASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 AC004877.2-201ENST00000623941 599 ntBASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL25A1Q9BXS0 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL25A1Q9BXS0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
COL25A1Q9BXS0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AC051619.7-201ENST00000568314 623 ntBASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL25A1Q9BXS0 LINC01126-201ENST00000623515 1646 ntBASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 AC108073.2-201ENST00000464002 357 ntBASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 AC010336.2-201ENST00000564226 506 ntBASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 AL022326.1-202ENST00000641533 845 ntBASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL25A1Q9BXS0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 CNN2P2-201ENST00000443536 909 ntBASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 CNN2P3-201ENST00000450201 906 ntBASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 SLC25A39P2-201ENST00000537614 270 ntBASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 AL136317.3-201ENST00000618497 906 ntBASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 AC009237.14-201ENST00000609975 1594 ntBASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL25A1Q9BXS0 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms