Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 AC026396.1-201ENST00000419388 421 ntBASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 AC090616.6-201ENST00000582640 721 ntBASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 AL732292.2-201ENST00000609649 430 ntBASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PAAF1Q9BRP4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 AC009065.1-201ENST00000564055 1225 ntBASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 RN7SL510P-201ENST00000581311 263 ntBASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 AL353692.3-201ENST00000407031 1396 ntBASIC19.7■□□□□ 0.74
PAAF1Q9BRP4 SDHAP2-201ENST00000455183 2001 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 TPM4P1-201ENST00000436100 807 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 NUS1P1-201ENST00000446295 882 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 RN7SL606P-201ENST00000472779 293 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AC091607.1-201ENST00000490318 1060 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AL592071.1-201ENST00000611956 408 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AC004263.2-201ENST00000617183 678 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AC124864.1-201ENST00000623408 392 ntBASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PAAF1Q9BRP4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 LINC00167-201ENST00000530583 1419 ntBASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms