Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC051619.7-201ENST00000568314 623 ntBASIC18.72■□□□□ 0.59
TTC28Q96AY4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TTC28Q96AY4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
TTC28Q96AY4 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
TTC28Q96AY4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.71■□□□□ 0.58
TTC28Q96AY4 ATP5G2P4-201ENST00000442175 420 ntBASIC18.71■□□□□ 0.58
TTC28Q96AY4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
TTC28Q96AY4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.71■□□□□ 0.58
TTC28Q96AY4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.71■□□□□ 0.58
TTC28Q96AY4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TTC28Q96AY4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.7■□□□□ 0.58
TTC28Q96AY4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 AC073621.1-201ENST00000392730 636 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 AC004461.1-201ENST00000412461 403 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 FAM86GP-201ENST00000448322 971 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 DUX4L27-201ENST00000554796 1261 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 AC027307.3-201ENST00000594262 1100 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 AC022145.2-201ENST00000598203 171 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 AC099343.3-201ENST00000605834 2503 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 AL691432.2-201ENST00000607222 2038 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 AF106564.1-201ENST00000607058 2553 ntBASIC18.69■□□□□ 0.58
TTC28Q96AY4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TTC28Q96AY4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.69■□□□□ 0.58
TTC28Q96AY4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.68■□□□□ 0.58
TTC28Q96AY4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TTC28Q96AY4 AC105339.1-204ENST00000636249 355 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms