Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP4Q8N3C7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP4Q8N3C7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.36■□□□□ 0.37
CLIP4Q8N3C7 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP4Q8N3C7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP4Q8N3C7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP4Q8N3C7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 PRORSD1P-201ENST00000295112 541 ntBASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AC068587.9-201ENST00000641814 219 ntBASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 BICD1-207ENST00000551848 1962 ntBASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLIP4Q8N3C7 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 AL354751.1-201ENST00000412768 1863 ntBASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 MTMR9LP-203ENST00000426597 1545 ntBASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 AC126763.1-201ENST00000552015 2118 ntBASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP4Q8N3C7 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 PKD1P1-201ENST00000458669 6805 ntBASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 KRT8P32-201ENST00000512863 1461 ntBASIC17.33■□□□□ 0.37
CLIP4Q8N3C7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 KRT8P3-201ENST00000519669 1449 ntBASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 AC026271.3-201ENST00000571884 352 ntBASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms