Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 MIR718-201ENST00000390190 70 ntBASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 GPAT2P1-201ENST00000444924 1672 ntBASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 TMEM191A-211ENST00000637163 1067 ntBASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC40Q4G0X9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC40Q4G0X9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC40Q4G0X9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC40Q4G0X9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
CCDC40Q4G0X9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC40Q4G0X9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 AC079598.2-202ENST00000546624 1451 ntBASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 AL354751.1-201ENST00000412768 1863 ntBASIC20.39■□□□□ 0.85
CCDC40Q4G0X9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 TSPY7P-201ENST00000431358 1114 ntBASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC40Q4G0X9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 CA15P1-201ENST00000481698 905 ntBASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms