Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 AL355877.3-201ENST00000622820 899 ntBASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 IRX1P1-201ENST00000438849 1838 ntBASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 DNAJB3-202ENST00000449667 1266 ntBASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 AC093909.1-201ENST00000504731 1122 ntBASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 CAND2-206ENST00000626378 333 ntTSL 5 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 AC073130.3-201ENST00000624389 2278 ntBASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 RCC2P3-201ENST00000418112 1537 ntBASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 HEIH-201ENST00000623091 1652 ntBASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 AC008556.1-201ENST00000610908 2040 ntBASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 ZNF259P1-201ENST00000407656 1365 ntBASIC22.61■■□□□ 1.21
CCDC88AQ3V6T2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 HNRNPA1P28-201ENST00000424481 961 ntBASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 HES2-202ENST00000377836 507 ntTSL 2 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 FGFR3P6-201ENST00000457012 610 ntBASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 AC012640.2-201ENST00000561606 901 ntBASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 AL591684.3-201ENST00000605187 298 ntBASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.6■■□□□ 1.21
CCDC88AQ3V6T2 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 PAN3-AS1-201ENST00000563843 1351 ntBASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 POM121L3P-201ENST00000419331 1163 ntBASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.59■■□□□ 1.21
CCDC88AQ3V6T2 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 MED15P5-201ENST00000423150 992 ntBASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 CYP51A1P1-201ENST00000492267 1507 ntBASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.58■■□□□ 1.21
CCDC88AQ3V6T2 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 FEM1AP3-201ENST00000403722 1741 ntBASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 CSF3-203ENST00000394148 622 ntTSL 3 BASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 AL356488.2-201ENST00000602755 427 ntBASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 AC027601.4-201ENST00000611259 610 ntBASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 FAM197Y3-203ENST00000618346 717 ntBASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC22.58■■□□□ 1.2
CCDC88AQ3V6T2 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms