Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 AC004951.3-201ENST00000418645 1148 ntBASIC14.13□□□□□ -0.15
HLA-DMBP28068 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 PRSS44-201ENST00000515154 1146 ntBASIC14.13□□□□□ -0.15
HLA-DMBP28068 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 AC011298.2-201ENST00000617989 482 ntBASIC14.13□□□□□ -0.15
HLA-DMBP28068 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 KRT8P3-201ENST00000519669 1449 ntBASIC14.13□□□□□ -0.15
HLA-DMBP28068 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 AC067852.2-201ENST00000590513 2313 ntBASIC14.13□□□□□ -0.15
HLA-DMBP28068 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DMBP28068 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
HLA-DMBP28068 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 NOC2LP2-201ENST00000407594 1944 ntBASIC14.12□□□□□ -0.15
HLA-DMBP28068 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 KSR1P1-201ENST00000446298 240 ntBASIC14.12□□□□□ -0.15
HLA-DMBP28068 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 REXO2-216ENST00000544196 452 ntTSL 3 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 RARRES2P10-201ENST00000564312 460 ntBASIC14.12□□□□□ -0.15
HLA-DMBP28068 AC233702.5-201ENST00000584107 538 ntBASIC14.12□□□□□ -0.15
HLA-DMBP28068 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DMBP28068 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DMBP28068 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms