Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 PMS2P7-201ENST00000506558 1336 ntBASIC23.29■■□□□ 1.32
COL5A3P25940 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC23.29■■□□□ 1.32
COL5A3P25940 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
COL5A3P25940 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC23.28■■□□□ 1.32
COL5A3P25940 AC021087.4-201ENST00000563761 564 ntBASIC23.28■■□□□ 1.32
COL5A3P25940 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 MTDHP3-201ENST00000594186 672 ntBASIC23.28■■□□□ 1.32
COL5A3P25940 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.28■■□□□ 1.32
COL5A3P25940 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC23.28■■□□□ 1.32
COL5A3P25940 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 FAM215A-202ENST00000632077 792 ntBASIC23.28■■□□□ 1.32
COL5A3P25940 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.28■■□□□ 1.32
COL5A3P25940 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.28■■□□□ 1.32
COL5A3P25940 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.28■■□□□ 1.32
COL5A3P25940 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
COL5A3P25940 AC093909.1-201ENST00000504731 1122 ntBASIC23.28■■□□□ 1.32
COL5A3P25940 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL5A3P25940 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC23.28■■□□□ 1.32
COL5A3P25940 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC23.28■■□□□ 1.32
COL5A3P25940 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC23.28■■□□□ 1.32
COL5A3P25940 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC23.28■■□□□ 1.32
COL5A3P25940 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 AL158211.5-201ENST00000623583 2518 ntBASIC23.27■■□□□ 1.32
COL5A3P25940 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC23.27■■□□□ 1.32
COL5A3P25940 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC23.27■■□□□ 1.32
COL5A3P25940 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC23.27■■□□□ 1.32
COL5A3P25940 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC23.27■■□□□ 1.32
COL5A3P25940 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
COL5A3P25940 AC092183.1-201ENST00000469884 875 ntBASIC23.27■■□□□ 1.32
COL5A3P25940 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC23.27■■□□□ 1.32
COL5A3P25940 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL5A3P25940 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
COL5A3P25940 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC23.27■■□□□ 1.32
COL5A3P25940 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.27■■□□□ 1.32
COL5A3P25940 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.27■■□□□ 1.32
COL5A3P25940 AP005117.1-201ENST00000584346 1413 ntBASIC23.27■■□□□ 1.31
COL5A3P25940 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC23.27■■□□□ 1.31
COL5A3P25940 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
COL5A3P25940 AC009102.3-201ENST00000623118 1491 ntBASIC23.26■■□□□ 1.31
COL5A3P25940 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
COL5A3P25940 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL5A3P25940 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.26■■□□□ 1.31
COL5A3P25940 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC23.26■■□□□ 1.31
COL5A3P25940 RBSN-204ENST00000449050 903 ntTSL 2 BASIC23.26■■□□□ 1.31
COL5A3P25940 CD63-204ENST00000546939 779 ntTSL 3 BASIC23.26■■□□□ 1.31
COL5A3P25940 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC23.26■■□□□ 1.31
COL5A3P25940 AC011467.2-201ENST00000598425 242 ntBASIC23.26■■□□□ 1.31
COL5A3P25940 AL139288.1-201ENST00000623748 933 ntBASIC23.26■■□□□ 1.31
COL5A3P25940 ASL-204ENST00000395331 1538 ntTSL 5 BASIC23.26■■□□□ 1.31
COL5A3P25940 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL5A3P25940 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL5A3P25940 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL5A3P25940 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
COL5A3P25940 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL5A3P25940 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL5A3P25940 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL5A3P25940 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.25■■□□□ 1.31
COL5A3P25940 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 FABP5-202ENST00000396359 986 ntTSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.25■■□□□ 1.31
COL5A3P25940 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC23.25■■□□□ 1.31
COL5A3P25940 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC23.25■■□□□ 1.31
COL5A3P25940 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL5A3P25940 LBH-204ENST00000406087 559 ntTSL 4 BASIC23.25■■□□□ 1.31
COL5A3P25940 AC132008.2-207ENST00000454517 770 ntBASIC23.25■■□□□ 1.31
COL5A3P25940 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC23.25■■□□□ 1.31
COL5A3P25940 AC116407.3-201ENST00000623905 1129 ntBASIC23.25■■□□□ 1.31
COL5A3P25940 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
COL5A3P25940 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms