Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL5A1P20908 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 SCARNA2-201ENST00000458748 420 ntBASIC17.73■□□□□ 0.43
COL5A1P20908 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.73■□□□□ 0.43
COL5A1P20908 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.73■□□□□ 0.43
COL5A1P20908 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.73■□□□□ 0.43
COL5A1P20908 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.73■□□□□ 0.43
COL5A1P20908 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A1P20908 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
COL5A1P20908 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
COL5A1P20908 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.72■□□□□ 0.43
COL5A1P20908 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.72■□□□□ 0.43
COL5A1P20908 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.72■□□□□ 0.43
COL5A1P20908 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.72■□□□□ 0.43
COL5A1P20908 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.72■□□□□ 0.43
COL5A1P20908 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.72■□□□□ 0.43
COL5A1P20908 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.72■□□□□ 0.43
COL5A1P20908 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
COL5A1P20908 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.72■□□□□ 0.43
COL5A1P20908 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.72■□□□□ 0.43
COL5A1P20908 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A1P20908 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
COL5A1P20908 RBM17P3-201ENST00000417687 1192 ntBASIC17.72■□□□□ 0.43
COL5A1P20908 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.72■□□□□ 0.43
COL5A1P20908 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.72■□□□□ 0.43
COL5A1P20908 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL5A1P20908 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL5A1P20908 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A1P20908 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.71■□□□□ 0.43
COL5A1P20908 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A1P20908 AC073648.2-201ENST00000510116 352 ntBASIC17.71■□□□□ 0.43
COL5A1P20908 AL591684.3-201ENST00000605187 298 ntBASIC17.71■□□□□ 0.43
COL5A1P20908 AL355877.3-201ENST00000622820 899 ntBASIC17.71■□□□□ 0.43
COL5A1P20908 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
COL5A1P20908 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A1P20908 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A1P20908 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A1P20908 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A1P20908 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A1P20908 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A1P20908 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A1P20908 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.71■□□□□ 0.43
COL5A1P20908 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
COL5A1P20908 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.7■□□□□ 0.42
COL5A1P20908 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 FGFR3P6-201ENST00000457012 610 ntBASIC17.7■□□□□ 0.42
COL5A1P20908 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.7■□□□□ 0.42
COL5A1P20908 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.7■□□□□ 0.42
COL5A1P20908 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.7■□□□□ 0.42
COL5A1P20908 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.7■□□□□ 0.42
COL5A1P20908 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL5A1P20908 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.7■□□□□ 0.42
COL5A1P20908 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL5A1P20908 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
COL5A1P20908 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
COL5A1P20908 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 IGHV3-22-201ENST00000520721 359 ntBASIC17.7■□□□□ 0.42
COL5A1P20908 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms