Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SDC1P18827 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.65■□□□□ 0.42
SDC1P18827 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 AC008764.6-201ENST00000595909 2069 ntBASIC17.65■□□□□ 0.42
SDC1P18827 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.65■□□□□ 0.42
SDC1P18827 PCDHB18P-201ENST00000524813 2368 ntBASIC17.65■□□□□ 0.42
SDC1P18827 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SDC1P18827 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SDC1P18827 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SDC1P18827 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.64■□□□□ 0.42
SDC1P18827 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SDC1P18827 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
SDC1P18827 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SDC1P18827 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 AC067852.2-201ENST00000590513 2313 ntBASIC17.64■□□□□ 0.41
SDC1P18827 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
SDC1P18827 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SDC1P18827 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC1P18827 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC1P18827 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC1P18827 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC1P18827 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.64■□□□□ 0.41
SDC1P18827 Z99916.2-201ENST00000604037 246 ntBASIC17.64■□□□□ 0.41
SDC1P18827 AC026471.5-201ENST00000615068 467 ntBASIC17.64■□□□□ 0.41
SDC1P18827 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.64■□□□□ 0.41
SDC1P18827 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC1P18827 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SDC1P18827 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.64■□□□□ 0.41
SDC1P18827 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC1P18827 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC1P18827 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.64■□□□□ 0.41
SDC1P18827 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SDC1P18827 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.63■□□□□ 0.41
SDC1P18827 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 AP005242.2-201ENST00000580065 1175 ntBASIC17.63■□□□□ 0.41
SDC1P18827 MIR3180-5-201ENST00000583743 153 ntBASIC17.63■□□□□ 0.41
SDC1P18827 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC1P18827 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SDC1P18827 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SDC1P18827 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.63■□□□□ 0.41
SDC1P18827 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
SDC1P18827 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC1P18827 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms