Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PRPF40AO75400 PRORSD1P-202ENST00000563365 2154 ntBASIC21.54■■□□□ 1.04
PRPF40AO75400 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PRPF40AO75400 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PRPF40AO75400 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PRPF40AO75400 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
PRPF40AO75400 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PRPF40AO75400 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PRPF40AO75400 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
PRPF40AO75400 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC21.53■■□□□ 1.04
PRPF40AO75400 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 AC009053.2-201ENST00000563701 2365 ntBASIC21.53■■□□□ 1.04
PRPF40AO75400 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
PRPF40AO75400 AL357033.4-201ENST00000617703 1807 ntBASIC21.53■■□□□ 1.04
PRPF40AO75400 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.53■■□□□ 1.04
PRPF40AO75400 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.53■■□□□ 1.04
PRPF40AO75400 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.53■■□□□ 1.04
PRPF40AO75400 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.53■■□□□ 1.04
PRPF40AO75400 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.53■■□□□ 1.04
PRPF40AO75400 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.53■■□□□ 1.04
PRPF40AO75400 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PRPF40AO75400 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.53■■□□□ 1.04
PRPF40AO75400 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PRPF40AO75400 PCDHA12-202ENST00000613593 2588 ntBASIC21.52■■□□□ 1.04
PRPF40AO75400 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PRPF40AO75400 KRT8P32-201ENST00000512863 1461 ntBASIC21.52■■□□□ 1.04
PRPF40AO75400 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.52■■□□□ 1.04
PRPF40AO75400 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC21.52■■□□□ 1.04
PRPF40AO75400 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PRPF40AO75400 PRORSD1P-201ENST00000295112 541 ntBASIC21.52■■□□□ 1.04
PRPF40AO75400 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 POM121L13P-201ENST00000422362 380 ntBASIC21.52■■□□□ 1.04
PRPF40AO75400 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.52■■□□□ 1.04
PRPF40AO75400 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.52■■□□□ 1.04
PRPF40AO75400 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
PRPF40AO75400 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.52■■□□□ 1.04
PRPF40AO75400 AC008403.3-201ENST00000598924 454 ntBASIC21.52■■□□□ 1.04
PRPF40AO75400 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.52■■□□□ 1.04
PRPF40AO75400 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
PRPF40AO75400 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.52■■□□□ 1.04
PRPF40AO75400 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
PRPF40AO75400 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.52■■□□□ 1.04
PRPF40AO75400 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRPF40AO75400 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PRPF40AO75400 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.52■■□□□ 1.03
PRPF40AO75400 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
PRPF40AO75400 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PRPF40AO75400 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.51■■□□□ 1.03
PRPF40AO75400 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 SLC25A6P5-201ENST00000435663 894 ntBASIC21.51■■□□□ 1.03
PRPF40AO75400 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
PRPF40AO75400 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.51■■□□□ 1.03
PRPF40AO75400 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.51■■□□□ 1.03
PRPF40AO75400 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PRPF40AO75400 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms