Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL049812.1-201ENST00000432563 2267 ntBASIC18.84■□□□□ 0.61
HOXC11O43248 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC11O43248 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC11O43248 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC11O43248 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC11O43248 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC11O43248 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC11O43248 MIR149-201ENST00000384879 89 ntBASIC18.83■□□□□ 0.6
HOXC11O43248 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.83■□□□□ 0.6
HOXC11O43248 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
HOXC11O43248 RN7SL606P-201ENST00000472779 293 ntBASIC18.83■□□□□ 0.6
HOXC11O43248 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXC11O43248 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXC11O43248 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC11O43248 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.83■□□□□ 0.6
HOXC11O43248 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC11O43248 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC11O43248 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HOXC11O43248 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC11O43248 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC11O43248 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
HOXC11O43248 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC11O43248 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 AL353692.3-201ENST00000407031 1396 ntBASIC18.82■□□□□ 0.6
HOXC11O43248 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 AC233702.3-201ENST00000578656 1387 ntBASIC18.82■□□□□ 0.6
HOXC11O43248 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 UNC93B7-201ENST00000509439 705 ntBASIC18.82■□□□□ 0.6
HOXC11O43248 GUSBP12-201ENST00000513727 720 ntBASIC18.82■□□□□ 0.6
HOXC11O43248 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.82■□□□□ 0.6
HOXC11O43248 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC11O43248 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC11O43248 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC11O43248 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC11O43248 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC11O43248 AC087289.5-201ENST00000586076 3175 ntBASIC18.81■□□□□ 0.6
HOXC11O43248 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
HOXC11O43248 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
HOXC11O43248 AC004870.1-201ENST00000315132 882 ntBASIC18.81■□□□□ 0.6
HOXC11O43248 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC11O43248 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HOXC11O43248 FAAHP1-202ENST00000446499 1238 ntBASIC18.81■□□□□ 0.6
HOXC11O43248 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.81■□□□□ 0.6
HOXC11O43248 AC104819.1-201ENST00000504587 486 ntBASIC18.81■□□□□ 0.6
HOXC11O43248 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.81■□□□□ 0.6
HOXC11O43248 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.81■□□□□ 0.6
HOXC11O43248 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 AL121772.3-201ENST00000610840 674 ntBASIC18.81■□□□□ 0.6
HOXC11O43248 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HOXC11O43248 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC11O43248 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
HOXC11O43248 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXC11O43248 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC11O43248 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXC11O43248 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
HOXC11O43248 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HOXC11O43248 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC11O43248 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXC11O43248 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC11O43248 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.8■□□□□ 0.6
HOXC11O43248 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.8■□□□□ 0.6
HOXC11O43248 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC11O43248 Z69720.1-201ENST00000601483 472 ntBASIC18.8■□□□□ 0.6
HOXC11O43248 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HOXC11O43248 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXC11O43248 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HOXC11O43248 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC11O43248 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms