Protein–RNA interactions for Protein: Q9UQE7

SMC3, Structural maintenance of chromosomes protein 3, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3Q9UQE7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC3Q9UQE7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC3Q9UQE7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SMC3Q9UQE7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC3Q9UQE7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.79■■□□□ 1.08
SMC3Q9UQE7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 MYLKP1-201ENST00000509077 1580 ntBASIC21.78■■□□□ 1.08
SMC3Q9UQE7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
SMC3Q9UQE7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 AC008556.1-201ENST00000610908 2040 ntBASIC21.77■■□□□ 1.08
SMC3Q9UQE7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 AL109659.2-201ENST00000606809 1674 ntBASIC21.77■■□□□ 1.08
SMC3Q9UQE7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC3Q9UQE7 AC067852.2-201ENST00000590513 2313 ntBASIC21.77■■□□□ 1.07
SMC3Q9UQE7 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 AC093677.2-201ENST00000600169 1863 ntBASIC21.76■■□□□ 1.07
SMC3Q9UQE7 AC008622.2-201ENST00000617006 1229 ntBASIC21.76■■□□□ 1.07
SMC3Q9UQE7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 FAM197Y4-202ENST00000622692 608 ntBASIC21.76■■□□□ 1.07
SMC3Q9UQE7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC3Q9UQE7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC3Q9UQE7 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMC3Q9UQE7 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC3Q9UQE7 MESTP1-201ENST00000404287 994 ntBASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms