Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 AC005104.2-201ENST00000427818 678 ntBASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 NUS1P2-201ENST00000417358 873 ntBASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 PIN1-206ENST00000587625 878 ntTSL 2 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 AC010240.3-201ENST00000607688 395 ntBASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
SHROOM4Q9ULL8 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 AF186996.4-201ENST00000467186 377 ntBASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC35.14■■■■□ 3.22
SHROOM4Q9ULL8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 VENTXP7-201ENST00000475503 772 ntBASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 AC145285.3-201ENST00000564603 959 ntBASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
SHROOM4Q9ULL8 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 FAM197Y8-203ENST00000450145 560 ntBASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 LINC02084-201ENST00000606069 1096 ntBASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC35.12■■■■□ 3.21
SHROOM4Q9ULL8 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 HOXB1-202ENST00000577092 1414 ntBASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 RN7SL606P-201ENST00000472779 293 ntBASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 MOK-208ENST00000519058 917 ntTSL 2 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC35.11■■■■□ 3.21
SHROOM4Q9ULL8 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 AC005332.3-201ENST00000589904 676 ntBASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 TERC-201ENST00000602385 541 ntBASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 AC148477.8-201ENST00000624298 468 ntBASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SHROOM4Q9ULL8 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 AC139887.3-201ENST00000568585 713 ntBASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC35.09■■■■□ 3.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms