Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CLCF1Q9UBD9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 ATP5G2P1-201ENST00000433580 426 ntBASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLCF1Q9UBD9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 NPAP1P7-201ENST00000613027 823 ntBASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLCF1Q9UBD9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CLCF1Q9UBD9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLCF1Q9UBD9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 HCG4P8-203ENST00000443049 980 ntBASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 KRT18P56-201ENST00000507275 550 ntBASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLCF1Q9UBD9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms