Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BCRP1-201ENST00000444246 691 ntBASIC18.29■□□□□ 0.52
VPS13AQ96RL7 ALG1L5P-201ENST00000482043 771 ntBASIC18.29■□□□□ 0.52
VPS13AQ96RL7 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 ZNF815P-204ENST00000434898 1737 ntBASIC18.29■□□□□ 0.52
VPS13AQ96RL7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 UNC93B6-202ENST00000528242 690 ntBASIC18.29■□□□□ 0.52
VPS13AQ96RL7 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 AC104390.1-201ENST00000555663 520 ntBASIC18.29■□□□□ 0.52
VPS13AQ96RL7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13AQ96RL7 AL162377.1-201ENST00000618844 1793 ntBASIC18.29■□□□□ 0.52
VPS13AQ96RL7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 MIR770-201ENST00000390219 98 ntBASIC18.28■□□□□ 0.52
VPS13AQ96RL7 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
VPS13AQ96RL7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 AC005082.1-201ENST00000413042 2259 ntBASIC18.27■□□□□ 0.52
VPS13AQ96RL7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13AQ96RL7 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 MTDHP3-201ENST00000594186 672 ntBASIC18.27■□□□□ 0.51
VPS13AQ96RL7 AC024563.2-201ENST00000603282 481 ntBASIC18.27■□□□□ 0.51
VPS13AQ96RL7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.27■□□□□ 0.51
VPS13AQ96RL7 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 AC190387.1-201ENST00000551683 408 ntBASIC18.26■□□□□ 0.51
VPS13AQ96RL7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.26■□□□□ 0.51
VPS13AQ96RL7 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms