Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC008556.1-201ENST00000610908 2040 ntBASIC18.76■□□□□ 0.59
TTC28Q96AY4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TTC28Q96AY4 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TTC28Q96AY4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TTC28Q96AY4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TTC28Q96AY4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 INGX-202ENST00000489074 768 ntBASIC18.75■□□□□ 0.59
TTC28Q96AY4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 LINC00628-201ENST00000628516 1289 ntBASIC18.75■□□□□ 0.59
TTC28Q96AY4 AC025048.6-201ENST00000634326 1161 ntBASIC18.75■□□□□ 0.59
TTC28Q96AY4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TTC28Q96AY4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TTC28Q96AY4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 FAM207CP-201ENST00000443486 507 ntBASIC18.75■□□□□ 0.59
TTC28Q96AY4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 PARP8-206ENST00000503665 572 ntTSL 4 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TTC28Q96AY4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TTC28Q96AY4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.74■□□□□ 0.59
TTC28Q96AY4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.74■□□□□ 0.59
TTC28Q96AY4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TTC28Q96AY4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.74■□□□□ 0.59
TTC28Q96AY4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 NME2P1-201ENST00000426182 414 ntBASIC18.74■□□□□ 0.59
TTC28Q96AY4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.74■□□□□ 0.59
TTC28Q96AY4 AC093520.2-201ENST00000561830 333 ntBASIC18.74■□□□□ 0.59
TTC28Q96AY4 AC004835.2-201ENST00000603762 682 ntBASIC18.74■□□□□ 0.59
TTC28Q96AY4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TTC28Q96AY4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TTC28Q96AY4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 AC023141.5-201ENST00000458585 616 ntBASIC18.73■□□□□ 0.59
TTC28Q96AY4 AC010336.2-201ENST00000564226 506 ntBASIC18.73■□□□□ 0.59
TTC28Q96AY4 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TTC28Q96AY4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.73■□□□□ 0.59
TTC28Q96AY4 AC008761.3-201ENST00000624803 892 ntBASIC18.73■□□□□ 0.59
TTC28Q96AY4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 AC006557.2-201ENST00000592985 1240 ntBASIC18.72■□□□□ 0.59
TTC28Q96AY4 AC011467.2-201ENST00000598425 242 ntBASIC18.72■□□□□ 0.59
TTC28Q96AY4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 AP000867.4-201ENST00000641616 219 ntBASIC18.72■□□□□ 0.59
TTC28Q96AY4 AC092720.2-201ENST00000602388 1665 ntBASIC18.72■□□□□ 0.59
TTC28Q96AY4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TTC28Q96AY4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.72■□□□□ 0.59
TTC28Q96AY4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms