Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.04■□□□□ 0.96
ERCC4Q92889 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
ERCC4Q92889 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.04■□□□□ 0.96
ERCC4Q92889 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
ERCC4Q92889 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
ERCC4Q92889 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.04■□□□□ 0.96
ERCC4Q92889 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
ERCC4Q92889 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.04■□□□□ 0.96
ERCC4Q92889 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
ERCC4Q92889 AC131212.4-201ENST00000623606 975 ntBASIC21.04■□□□□ 0.96
ERCC4Q92889 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
ERCC4Q92889 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
ERCC4Q92889 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
ERCC4Q92889 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
ERCC4Q92889 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.03■□□□□ 0.96
ERCC4Q92889 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.03■□□□□ 0.96
ERCC4Q92889 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.03■□□□□ 0.96
ERCC4Q92889 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.03■□□□□ 0.96
ERCC4Q92889 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.03■□□□□ 0.96
ERCC4Q92889 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.03■□□□□ 0.96
ERCC4Q92889 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC21.03■□□□□ 0.96
ERCC4Q92889 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ERCC4Q92889 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.03■□□□□ 0.96
ERCC4Q92889 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
ERCC4Q92889 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
ERCC4Q92889 AC128676.1-201ENST00000454392 318 ntBASIC21.02■□□□□ 0.96
ERCC4Q92889 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.02■□□□□ 0.96
ERCC4Q92889 C1QBPP2-201ENST00000528754 825 ntBASIC21.02■□□□□ 0.96
ERCC4Q92889 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.02■□□□□ 0.96
ERCC4Q92889 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.02■□□□□ 0.96
ERCC4Q92889 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.02■□□□□ 0.96
ERCC4Q92889 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC4Q92889 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
ERCC4Q92889 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ERCC4Q92889 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.02■□□□□ 0.95
ERCC4Q92889 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.02■□□□□ 0.95
ERCC4Q92889 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.01■□□□□ 0.95
ERCC4Q92889 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
ERCC4Q92889 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 AP000997.3-201ENST00000623333 2250 ntBASIC21.01■□□□□ 0.95
ERCC4Q92889 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
ERCC4Q92889 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC4Q92889 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.01■□□□□ 0.95
ERCC4Q92889 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.01■□□□□ 0.95
ERCC4Q92889 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.01■□□□□ 0.95
ERCC4Q92889 CR392000.1-201ENST00000624770 1228 ntBASIC21.01■□□□□ 0.95
ERCC4Q92889 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC4Q92889 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC4Q92889 KRT8P3-201ENST00000519669 1449 ntBASIC21.01■□□□□ 0.95
ERCC4Q92889 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms