Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CRYGFP-201ENST00000418459 633 ntBASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 BICD1-207ENST00000551848 1962 ntBASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 AC008556.1-201ENST00000610908 2040 ntBASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC40Q4G0X9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 AL109659.2-201ENST00000606809 1674 ntBASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 KRT8P45-201ENST00000414328 1447 ntBASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC40Q4G0X9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 AL023284.2-201ENST00000405850 579 ntBASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 MCCD1P1-208ENST00000445732 328 ntBASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 AC008550.1-201ENST00000511500 884 ntBASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 AP003071.4-201ENST00000562276 1284 ntBASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC40Q4G0X9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms