Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL7A1Q02388 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.23□□□□□ -0.29
COL7A1Q02388 OR7E14P-202ENST00000530490 1290 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.23□□□□□ -0.29
COL7A1Q02388 MTDHP3-201ENST00000594186 672 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC13.23□□□□□ -0.29
COL7A1Q02388 TP73-AS1-210ENST00000637775 1455 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC13.23□□□□□ -0.29
COL7A1Q02388 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL7A1Q02388 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.23□□□□□ -0.29
COL7A1Q02388 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.23□□□□□ -0.29
COL7A1Q02388 UNC93B6-202ENST00000528242 690 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.23□□□□□ -0.29
COL7A1Q02388 COPE-211ENST00000600932 1144 ntTSL 5 BASIC13.23□□□□□ -0.29
COL7A1Q02388 AL096865.1-201ENST00000606796 927 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC13.23□□□□□ -0.29
COL7A1Q02388 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL7A1Q02388 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC13.23□□□□□ -0.29
COL7A1Q02388 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
COL7A1Q02388 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC13.23□□□□□ -0.29
COL7A1Q02388 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC13.23□□□□□ -0.29
COL7A1Q02388 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.23□□□□□ -0.29
COL7A1Q02388 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL7A1Q02388 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL7A1Q02388 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC13.22□□□□□ -0.29
COL7A1Q02388 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC13.22□□□□□ -0.29
COL7A1Q02388 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.22□□□□□ -0.29
COL7A1Q02388 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.22□□□□□ -0.29
COL7A1Q02388 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.22□□□□□ -0.29
COL7A1Q02388 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.22□□□□□ -0.29
COL7A1Q02388 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.22□□□□□ -0.29
COL7A1Q02388 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL7A1Q02388 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL7A1Q02388 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL7A1Q02388 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL7A1Q02388 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC13.22□□□□□ -0.29
COL7A1Q02388 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL7A1Q02388 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.22□□□□□ -0.29
COL7A1Q02388 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.22□□□□□ -0.29
COL7A1Q02388 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.22□□□□□ -0.29
COL7A1Q02388 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 AC106028.4-201ENST00000614509 607 ntBASIC13.22□□□□□ -0.29
COL7A1Q02388 AC008735.5-201ENST00000623544 497 ntBASIC13.22□□□□□ -0.29
COL7A1Q02388 PWWP2AP1-201ENST00000429776 2273 ntBASIC13.22□□□□□ -0.29
COL7A1Q02388 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL7A1Q02388 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
COL7A1Q02388 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.21□□□□□ -0.29
COL7A1Q02388 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.21□□□□□ -0.29
COL7A1Q02388 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.21□□□□□ -0.29
COL7A1Q02388 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.21□□□□□ -0.29
COL7A1Q02388 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.21□□□□□ -0.29
COL7A1Q02388 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.21□□□□□ -0.29
COL7A1Q02388 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.21□□□□□ -0.29
COL7A1Q02388 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.21□□□□□ -0.29
COL7A1Q02388 GOLGA2P11-201ENST00000562660 1621 ntBASIC13.21□□□□□ -0.29
COL7A1Q02388 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms