Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 AC112777.1-201ENST00000540175 1423 ntBASIC13.37□□□□□ -0.27
PRKDCP78527 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.37□□□□□ -0.27
PRKDCP78527 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 AC011467.2-201ENST00000598425 242 ntBASIC13.37□□□□□ -0.27
PRKDCP78527 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.37□□□□□ -0.27
PRKDCP78527 GAS2L1P1-201ENST00000420145 1480 ntBASIC13.37□□□□□ -0.27
PRKDCP78527 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC13.37□□□□□ -0.27
PRKDCP78527 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
PRKDCP78527 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC13.37□□□□□ -0.27
PRKDCP78527 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.37□□□□□ -0.27
PRKDCP78527 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.37□□□□□ -0.27
PRKDCP78527 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.37□□□□□ -0.27
PRKDCP78527 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.37□□□□□ -0.27
PRKDCP78527 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.37□□□□□ -0.27
PRKDCP78527 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.37□□□□□ -0.27
PRKDCP78527 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
PRKDCP78527 EP400NL-214ENST00000641289 2402 ntBASIC13.37□□□□□ -0.27
PRKDCP78527 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 LINC01521-201ENST00000504184 1943 ntBASIC13.36□□□□□ -0.27
PRKDCP78527 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC13.36□□□□□ -0.27
PRKDCP78527 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC13.36□□□□□ -0.27
PRKDCP78527 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.36□□□□□ -0.27
PRKDCP78527 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.36□□□□□ -0.27
PRKDCP78527 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
PRKDCP78527 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC13.36□□□□□ -0.27
PRKDCP78527 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
PRKDCP78527 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.36□□□□□ -0.27
PRKDCP78527 AC069262.1-201ENST00000539058 672 ntBASIC13.36□□□□□ -0.27
PRKDCP78527 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.36□□□□□ -0.27
PRKDCP78527 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
PRKDCP78527 NKAPP1-205ENST00000585790 367 ntBASIC13.36□□□□□ -0.27
PRKDCP78527 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
PRKDCP78527 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.36□□□□□ -0.27
PRKDCP78527 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
PRKDCP78527 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.36□□□□□ -0.27
PRKDCP78527 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 AC093214.1-201ENST00000511688 1107 ntBASIC13.36□□□□□ -0.27
PRKDCP78527 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.36□□□□□ -0.27
PRKDCP78527 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
PRKDCP78527 AQP6-203ENST00000551733 849 ntTSL 3 BASIC13.36□□□□□ -0.27
PRKDCP78527 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
PRKDCP78527 MIR6752-201ENST00000618442 71 ntBASIC13.36□□□□□ -0.27
PRKDCP78527 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
PRKDCP78527 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
PRKDCP78527 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
PRKDCP78527 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC13.35□□□□□ -0.27
PRKDCP78527 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 METTL23-205ENST00000588302 925 ntTSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 AC073592.5-201ENST00000624854 528 ntBASIC13.35□□□□□ -0.27
PRKDCP78527 AL513210.1-201ENST00000629608 234 ntBASIC13.35□□□□□ -0.27
PRKDCP78527 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC13.35□□□□□ -0.27
PRKDCP78527 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
PRKDCP78527 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
PRKDCP78527 OR8S1-201ENST00000310194 1080 ntBASIC13.35□□□□□ -0.27
PRKDCP78527 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.35□□□□□ -0.27
PRKDCP78527 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.35□□□□□ -0.27
PRKDCP78527 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.35□□□□□ -0.27
PRKDCP78527 RN7SL204P-201ENST00000582831 262 ntBASIC13.35□□□□□ -0.27
PRKDCP78527 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PRKDCP78527 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
PRKDCP78527 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC13.35□□□□□ -0.27
PRKDCP78527 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.35□□□□□ -0.27
PRKDCP78527 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.34□□□□□ -0.27
PRKDCP78527 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms