Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CKS1BP61024 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC12.99□□□□□ -0.33
CKS1BP61024 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC12.99□□□□□ -0.33
CKS1BP61024 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC12.99□□□□□ -0.33
CKS1BP61024 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
CKS1BP61024 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC12.98□□□□□ -0.33
CKS1BP61024 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 STX7-201ENST00000367937 1090 ntTSL 5 BASIC12.98□□□□□ -0.33
CKS1BP61024 GXYLT1P2-201ENST00000433312 1230 ntBASIC12.98□□□□□ -0.33
CKS1BP61024 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 C2orf69P4-201ENST00000565394 541 ntBASIC12.98□□□□□ -0.33
CKS1BP61024 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
CKS1BP61024 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC12.98□□□□□ -0.33
CKS1BP61024 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC12.98□□□□□ -0.33
CKS1BP61024 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CKS1BP61024 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CKS1BP61024 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CKS1BP61024 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CKS1BP61024 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CKS1BP61024 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CKS1BP61024 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC12.97□□□□□ -0.33
CKS1BP61024 UQCRFS1P1-201ENST00000435169 820 ntBASIC12.97□□□□□ -0.33
CKS1BP61024 KRT18P61-201ENST00000585825 1298 ntBASIC12.97□□□□□ -0.33
CKS1BP61024 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC12.97□□□□□ -0.33
CKS1BP61024 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CKS1BP61024 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC12.97□□□□□ -0.33
CKS1BP61024 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC12.97□□□□□ -0.33
CKS1BP61024 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms