Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.94■□□□□ 0.62
CDH4P55283 MIR149-201ENST00000384879 89 ntBASIC18.94■□□□□ 0.62
CDH4P55283 HLA-F-220ENST00000434407 884 ntBASIC18.94■□□□□ 0.62
CDH4P55283 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH4P55283 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.94■□□□□ 0.62
CDH4P55283 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH4P55283 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.94■□□□□ 0.62
CDH4P55283 AL136038.4-201ENST00000603606 1261 ntBASIC18.94■□□□□ 0.62
CDH4P55283 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.94■□□□□ 0.62
CDH4P55283 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CDH4P55283 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH4P55283 AL391807.1-203ENST00000604392 2365 ntBASIC18.94■□□□□ 0.62
CDH4P55283 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 TNXA-203ENST00000507684 2038 ntBASIC18.94■□□□□ 0.62
CDH4P55283 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDH4P55283 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH4P55283 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH4P55283 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CDH4P55283 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CDH4P55283 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CDH4P55283 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CDH4P55283 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CDH4P55283 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH4P55283 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH4P55283 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CDH4P55283 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
CDH4P55283 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH4P55283 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH4P55283 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.92■□□□□ 0.62
CDH4P55283 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CDH4P55283 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CDH4P55283 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CDH4P55283 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CDH4P55283 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.92■□□□□ 0.62
CDH4P55283 AC009102.3-201ENST00000623118 1491 ntBASIC18.92■□□□□ 0.62
CDH4P55283 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CDH4P55283 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.92■□□□□ 0.62
CDH4P55283 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.92■□□□□ 0.62
CDH4P55283 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.92■□□□□ 0.62
CDH4P55283 AL136038.3-201ENST00000561909 1096 ntBASIC18.92■□□□□ 0.62
CDH4P55283 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.92■□□□□ 0.62
CDH4P55283 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.92■□□□□ 0.62
CDH4P55283 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.92■□□□□ 0.62
CDH4P55283 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.92■□□□□ 0.62
CDH4P55283 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH4P55283 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.91■□□□□ 0.62
CDH4P55283 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CDH4P55283 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDH4P55283 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.91■□□□□ 0.62
CDH4P55283 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.91■□□□□ 0.62
CDH4P55283 FAM86EP-206ENST00000510506 987 ntBASIC18.91■□□□□ 0.62
CDH4P55283 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.91■□□□□ 0.62
CDH4P55283 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.91■□□□□ 0.62
CDH4P55283 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.91■□□□□ 0.62
CDH4P55283 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.91■□□□□ 0.62
CDH4P55283 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.91■□□□□ 0.62
CDH4P55283 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH4P55283 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH4P55283 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CDH4P55283 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms