Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GABARAPL3-202ENST00000624044 1851 ntBASIC25.61■■□□□ 1.69
MSH6P52701 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC25.61■■□□□ 1.69
MSH6P52701 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH6P52701 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
MSH6P52701 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH6P52701 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
MSH6P52701 RBSN-204ENST00000449050 903 ntTSL 2 BASIC25.6■■□□□ 1.69
MSH6P52701 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC25.6■■□□□ 1.69
MSH6P52701 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC25.6■■□□□ 1.69
MSH6P52701 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
MSH6P52701 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH6P52701 AC092667.1-201ENST00000434301 2586 ntBASIC25.6■■□□□ 1.69
MSH6P52701 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC25.6■■□□□ 1.69
MSH6P52701 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH6P52701 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
MSH6P52701 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC25.6■■□□□ 1.69
MSH6P52701 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH6P52701 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
MSH6P52701 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC25.59■■□□□ 1.69
MSH6P52701 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC25.59■■□□□ 1.69
MSH6P52701 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC25.59■■□□□ 1.69
MSH6P52701 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC25.59■■□□□ 1.69
MSH6P52701 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC25.59■■□□□ 1.69
MSH6P52701 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
MSH6P52701 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC25.59■■□□□ 1.69
MSH6P52701 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC25.59■■□□□ 1.69
MSH6P52701 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC25.58■■□□□ 1.69
MSH6P52701 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH6P52701 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH6P52701 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
MSH6P52701 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
MSH6P52701 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC25.58■■□□□ 1.69
MSH6P52701 UNC93B6-202ENST00000528242 690 ntBASIC25.58■■□□□ 1.69
MSH6P52701 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC25.58■■□□□ 1.69
MSH6P52701 AC009533.2-201ENST00000543664 586 ntBASIC25.58■■□□□ 1.69
MSH6P52701 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC25.58■■□□□ 1.69
MSH6P52701 MTDHP5-201ENST00000598980 586 ntBASIC25.58■■□□□ 1.69
MSH6P52701 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC25.58■■□□□ 1.69
MSH6P52701 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC25.58■■□□□ 1.69
MSH6P52701 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH6P52701 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
MSH6P52701 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH6P52701 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
MSH6P52701 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC25.58■■□□□ 1.69
MSH6P52701 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC25.58■■□□□ 1.69
MSH6P52701 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC25.58■■□□□ 1.68
MSH6P52701 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
MSH6P52701 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
MSH6P52701 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC25.57■■□□□ 1.68
MSH6P52701 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC25.57■■□□□ 1.68
MSH6P52701 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 DANCR-204ENST00000444958 709 ntTSL 3 BASIC25.57■■□□□ 1.68
MSH6P52701 MEG3-211ENST00000452514 461 ntTSL 3 BASIC25.57■■□□□ 1.68
MSH6P52701 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC25.57■■□□□ 1.68
MSH6P52701 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC25.57■■□□□ 1.68
MSH6P52701 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC25.57■■□□□ 1.68
MSH6P52701 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
MSH6P52701 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
MSH6P52701 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
MSH6P52701 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH6P52701 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC25.57■■□□□ 1.68
MSH6P52701 AL391422.3-201ENST00000603791 2761 ntBASIC25.57■■□□□ 1.68
MSH6P52701 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 INIP-202ENST00000374236 874 ntTSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
MSH6P52701 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC25.56■■□□□ 1.68
MSH6P52701 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC25.56■■□□□ 1.68
MSH6P52701 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC25.56■■□□□ 1.68
MSH6P52701 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC25.56■■□□□ 1.68
MSH6P52701 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
MSH6P52701 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
MSH6P52701 AL356309.3-201ENST00000624132 1934 ntBASIC25.56■■□□□ 1.68
MSH6P52701 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
MSH6P52701 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 BEX3-201ENST00000361298 921 ntTSL 2 BASIC25.56■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms