Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC31■■■□□ 2.55
CUX1P39880 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CUX1P39880 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC31■■■□□ 2.55
CUX1P39880 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC30.99■■■□□ 2.55
CUX1P39880 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
CUX1P39880 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC30.99■■■□□ 2.55
CUX1P39880 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
CUX1P39880 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC30.99■■■□□ 2.55
CUX1P39880 AC012640.2-201ENST00000561606 901 ntBASIC30.99■■■□□ 2.55
CUX1P39880 AC034105.1-201ENST00000563488 319 ntBASIC30.99■■■□□ 2.55
CUX1P39880 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC30.99■■■□□ 2.55
CUX1P39880 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC30.99■■■□□ 2.55
CUX1P39880 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC30.99■■■□□ 2.55
CUX1P39880 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX1P39880 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC30.98■■■□□ 2.55
CUX1P39880 FAM220CP-201ENST00000395253 831 ntBASIC30.98■■■□□ 2.55
CUX1P39880 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC30.98■■■□□ 2.55
CUX1P39880 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
CUX1P39880 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC30.98■■■□□ 2.55
CUX1P39880 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC30.98■■■□□ 2.55
CUX1P39880 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC30.98■■■□□ 2.55
CUX1P39880 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
CUX1P39880 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC30.98■■■□□ 2.55
CUX1P39880 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC30.98■■■□□ 2.55
CUX1P39880 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX1P39880 CD63-204ENST00000546939 779 ntTSL 3 BASIC30.98■■■□□ 2.55
CUX1P39880 AC021087.4-201ENST00000563761 564 ntBASIC30.98■■■□□ 2.55
CUX1P39880 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC30.97■■■□□ 2.55
CUX1P39880 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX1P39880 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX1P39880 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC30.97■■■□□ 2.55
CUX1P39880 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
CUX1P39880 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX1P39880 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CUX1P39880 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC30.97■■■□□ 2.55
CUX1P39880 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX1P39880 AC093909.1-201ENST00000504731 1122 ntBASIC30.97■■■□□ 2.55
CUX1P39880 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CUX1P39880 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC30.97■■■□□ 2.55
CUX1P39880 MTDHP3-201ENST00000594186 672 ntBASIC30.97■■■□□ 2.55
CUX1P39880 AC140113.2-201ENST00000604370 208 ntBASIC30.97■■■□□ 2.55
CUX1P39880 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC30.97■■■□□ 2.55
CUX1P39880 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CUX1P39880 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX1P39880 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CUX1P39880 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CUX1P39880 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX1P39880 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CUX1P39880 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC30.96■■■□□ 2.55
CUX1P39880 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC30.96■■■□□ 2.55
CUX1P39880 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC30.96■■■□□ 2.55
CUX1P39880 AC011467.2-201ENST00000598425 242 ntBASIC30.96■■■□□ 2.55
CUX1P39880 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC30.96■■■□□ 2.55
CUX1P39880 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX1P39880 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX1P39880 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC30.95■■■□□ 2.55
CUX1P39880 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX1P39880 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX1P39880 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX1P39880 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX1P39880 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC30.95■■■□□ 2.55
CUX1P39880 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC30.95■■■□□ 2.55
CUX1P39880 RBSN-204ENST00000449050 903 ntTSL 2 BASIC30.95■■■□□ 2.55
CUX1P39880 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC30.95■■■□□ 2.55
CUX1P39880 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX1P39880 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC30.95■■■□□ 2.55
CUX1P39880 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
CUX1P39880 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC30.95■■■□□ 2.55
CUX1P39880 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX1P39880 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC30.95■■■□□ 2.55
CUX1P39880 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CUX1P39880 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC30.94■■■□□ 2.54
CUX1P39880 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC30.94■■■□□ 2.54
CUX1P39880 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX1P39880 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX1P39880 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
CUX1P39880 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
CUX1P39880 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
CUX1P39880 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX1P39880 LBH-204ENST00000406087 559 ntTSL 4 BASIC30.94■■■□□ 2.54
CUX1P39880 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC30.94■■■□□ 2.54
CUX1P39880 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC30.94■■■□□ 2.54
CUX1P39880 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX1P39880 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC30.93■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms