Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC26.05■■□□□ 1.76
NPHP4O75161 AC068472.1-201ENST00000474589 881 ntBASIC26.05■■□□□ 1.76
NPHP4O75161 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
NPHP4O75161 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC26.05■■□□□ 1.76
NPHP4O75161 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP4O75161 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC26.04■■□□□ 1.76
NPHP4O75161 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC26.04■■□□□ 1.76
NPHP4O75161 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC26.04■■□□□ 1.76
NPHP4O75161 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC26.04■■□□□ 1.76
NPHP4O75161 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC26.04■■□□□ 1.76
NPHP4O75161 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
NPHP4O75161 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 AC254562.1-201ENST00000417586 456 ntBASIC26.04■■□□□ 1.76
NPHP4O75161 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC26.04■■□□□ 1.76
NPHP4O75161 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC26.04■■□□□ 1.76
NPHP4O75161 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
NPHP4O75161 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP4O75161 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC26.04■■□□□ 1.76
NPHP4O75161 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP4O75161 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP4O75161 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP4O75161 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC26.03■■□□□ 1.76
NPHP4O75161 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC26.03■■□□□ 1.76
NPHP4O75161 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP4O75161 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
NPHP4O75161 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP4O75161 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP4O75161 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
NPHP4O75161 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
NPHP4O75161 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC26.03■■□□□ 1.76
NPHP4O75161 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC26.03■■□□□ 1.76
NPHP4O75161 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
NPHP4O75161 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
NPHP4O75161 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC26.02■■□□□ 1.76
NPHP4O75161 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.02■■□□□ 1.76
NPHP4O75161 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 LAGE3P1-201ENST00000425356 484 ntBASIC26.02■■□□□ 1.76
NPHP4O75161 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
NPHP4O75161 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC26.02■■□□□ 1.76
NPHP4O75161 RNF151-202ENST00000569210 853 ntTSL 2 BASIC26.02■■□□□ 1.76
NPHP4O75161 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC26.02■■□□□ 1.76
NPHP4O75161 AC068587.9-201ENST00000641814 219 ntBASIC26.02■■□□□ 1.76
NPHP4O75161 AC125634.1-201ENST00000438758 1403 ntBASIC26.02■■□□□ 1.76
NPHP4O75161 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC26.02■■□□□ 1.76
NPHP4O75161 Z98044.1-201ENST00000632503 1764 ntBASIC26.02■■□□□ 1.76
NPHP4O75161 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC26.02■■□□□ 1.76
NPHP4O75161 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC26.02■■□□□ 1.76
NPHP4O75161 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP4O75161 PNMT-202ENST00000394246 821 ntTSL 2 BASIC26.01■■□□□ 1.75
NPHP4O75161 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC26.01■■□□□ 1.75
NPHP4O75161 AL645939.2-201ENST00000427340 991 ntBASIC26.01■■□□□ 1.75
NPHP4O75161 AC244107.1-201ENST00000442033 332 ntBASIC26.01■■□□□ 1.75
NPHP4O75161 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
NPHP4O75161 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC26.01■■□□□ 1.75
NPHP4O75161 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP4O75161 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC26.01■■□□□ 1.75
NPHP4O75161 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC26.01■■□□□ 1.75
NPHP4O75161 SNHG9-202ENST00000564014 471 ntBASIC26.01■■□□□ 1.75
NPHP4O75161 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP4O75161 COX5A-206ENST00000568783 571 ntTSL 3 BASIC26.01■■□□□ 1.75
NPHP4O75161 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP4O75161 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC26.01■■□□□ 1.75
NPHP4O75161 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP4O75161 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC26■■□□□ 1.75
NPHP4O75161 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC26■■□□□ 1.75
NPHP4O75161 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC26■■□□□ 1.75
NPHP4O75161 LHX6-205ENST00000464484 666 ntTSL 2 BASIC26■■□□□ 1.75
NPHP4O75161 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC26■■□□□ 1.75
NPHP4O75161 AC005829.1-201ENST00000570002 483 ntBASIC26■■□□□ 1.75
NPHP4O75161 MIR4469-201ENST00000583919 79 ntBASIC26■■□□□ 1.75
NPHP4O75161 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC26■■□□□ 1.75
NPHP4O75161 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC26■■□□□ 1.75
NPHP4O75161 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC26■■□□□ 1.75
NPHP4O75161 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC26■■□□□ 1.75
NPHP4O75161 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP4O75161 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP4O75161 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP4O75161 WDR53-203ENST00000429115 683 ntTSL 2 BASIC25.99■■□□□ 1.75
NPHP4O75161 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC25.99■■□□□ 1.75
NPHP4O75161 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC25.99■■□□□ 1.75
NPHP4O75161 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC25.99■■□□□ 1.75
NPHP4O75161 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC25.99■■□□□ 1.75
NPHP4O75161 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC25.99■■□□□ 1.75
NPHP4O75161 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms