Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.44■□□□□ 0.38
LDB3O75112 COX11P1-201ENST00000489116 835 ntBASIC17.44■□□□□ 0.38
LDB3O75112 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.44■□□□□ 0.38
LDB3O75112 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.44■□□□□ 0.38
LDB3O75112 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.44■□□□□ 0.38
LDB3O75112 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.44■□□□□ 0.38
LDB3O75112 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 AC139887.4-201ENST00000607877 719 ntBASIC17.44■□□□□ 0.38
LDB3O75112 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.44■□□□□ 0.38
LDB3O75112 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 KRT8P50-201ENST00000562022 1438 ntBASIC17.44■□□□□ 0.38
LDB3O75112 HOXB1-202ENST00000577092 1414 ntBASIC17.44■□□□□ 0.38
LDB3O75112 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.44■□□□□ 0.38
LDB3O75112 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.43■□□□□ 0.38
LDB3O75112 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
LDB3O75112 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
LDB3O75112 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.43■□□□□ 0.38
LDB3O75112 AC117947.1-201ENST00000427448 529 ntBASIC17.43■□□□□ 0.38
LDB3O75112 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.43■□□□□ 0.38
LDB3O75112 BX664615.1-201ENST00000443558 458 ntBASIC17.43■□□□□ 0.38
LDB3O75112 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LDB3O75112 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
LDB3O75112 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.43■□□□□ 0.38
LDB3O75112 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.43■□□□□ 0.38
LDB3O75112 AC112777.1-201ENST00000540175 1423 ntBASIC17.43■□□□□ 0.38
LDB3O75112 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.43■□□□□ 0.38
LDB3O75112 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDB3O75112 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LDB3O75112 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.42■□□□□ 0.38
LDB3O75112 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.42■□□□□ 0.38
LDB3O75112 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LDB3O75112 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.42■□□□□ 0.38
LDB3O75112 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.42■□□□□ 0.38
LDB3O75112 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 KRT8P7-201ENST00000533003 1432 ntBASIC17.42■□□□□ 0.38
LDB3O75112 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.42■□□□□ 0.38
LDB3O75112 AP000523.1-201ENST00000398242 1049 ntBASIC17.42■□□□□ 0.38
LDB3O75112 TMPOP1-202ENST00000424642 1267 ntBASIC17.42■□□□□ 0.38
LDB3O75112 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.42■□□□□ 0.38
LDB3O75112 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.42■□□□□ 0.38
LDB3O75112 KRT18P41-201ENST00000518924 1277 ntBASIC17.42■□□□□ 0.38
LDB3O75112 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.42■□□□□ 0.38
LDB3O75112 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.42■□□□□ 0.38
LDB3O75112 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.42■□□□□ 0.38
LDB3O75112 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.42■□□□□ 0.38
LDB3O75112 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
LDB3O75112 AC140113.3-201ENST00000605663 199 ntBASIC17.42■□□□□ 0.38
LDB3O75112 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.42■□□□□ 0.38
LDB3O75112 AC006011.2-201ENST00000621313 1158 ntBASIC17.42■□□□□ 0.38
LDB3O75112 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LDB3O75112 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDB3O75112 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
LDB3O75112 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms