Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC13.21□□□□□ -0.3
LINC01549A6NIU2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 AL031432.3-201ENST00000607698 485 ntBASIC13.2□□□□□ -0.3
LINC01549A6NIU2 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC01549A6NIU2 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 AC135776.1-201ENST00000319817 2481 ntBASIC13.19□□□□□ -0.3
LINC01549A6NIU2 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.19□□□□□ -0.3
LINC01549A6NIU2 AC093677.2-201ENST00000600169 1863 ntBASIC13.19□□□□□ -0.3
LINC01549A6NIU2 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 GAS2L1P1-201ENST00000420145 1480 ntBASIC13.19□□□□□ -0.3
LINC01549A6NIU2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 SNCG-201ENST00000348795 684 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 SP2-202ENST00000613139 908 ntTSL 5 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
LINC01549A6NIU2 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.18□□□□□ -0.3
LINC01549A6NIU2 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01549A6NIU2 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms