Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 KRT18P48-201ENST00000434763 852 ntBASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 AC005332.3-201ENST00000589904 676 ntBASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 AC024563.2-201ENST00000603282 481 ntBASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMIM28A0A1B0GU29 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 Z83836.1-201ENST00000624605 1642 ntBASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 MIR149-201ENST00000384879 89 ntBASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 AP002383.4-201ENST00000442518 975 ntBASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 AC092119.3-201ENST00000612618 583 ntBASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMIM28A0A1B0GU29 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.84■□□□□ 0.77
SMIM28A0A1B0GU29 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 MIR3180-1-201ENST00000580374 94 ntBASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 MIR3180-3-201ENST00000584616 94 ntBASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 AL390719.2-201ENST00000606993 987 ntBASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMIM28A0A1B0GU29 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMIM28A0A1B0GU29 AC009102.3-201ENST00000623118 1491 ntBASIC19.83■□□□□ 0.76
SMIM28A0A1B0GU29 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms