Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ABBA01031661.1-201ENST00000634362 1253 ntBASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 NSUN5P1-202ENST00000421140 1535 ntBASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 NSUN5P2-203ENST00000457352 1529 ntBASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 AC022898.2-201ENST00000616822 1312 ntBASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 AL032819.2-201ENST00000624543 2162 ntBASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 PGAM5P1-201ENST00000518923 814 ntBASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 GPR32P1-201ENST00000601788 811 ntBASIC35.22■■■■□ 3.23
SHROOM4Q9ULL8 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 FP475955.4-201ENST00000623131 1990 ntBASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 KRT18P23-201ENST00000435622 1283 ntBASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 RPL18-209ENST00000550645 463 ntTSL 5 BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 RPL18-214ENST00000552588 559 ntTSL 3 BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC35.21■■■■□ 3.23
SHROOM4Q9ULL8 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 GGCT-205ENST00000409436 954 ntTSL 3 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 PMS2P2-201ENST00000425039 1128 ntBASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 TEN1-204ENST00000588202 862 ntTSL 3 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC35.2■■■■□ 3.23
SHROOM4Q9ULL8 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC35.2■■■■□ 3.22
SHROOM4Q9ULL8 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
SHROOM4Q9ULL8 KRT8P32-201ENST00000512863 1461 ntBASIC35.19■■■■□ 3.22
SHROOM4Q9ULL8 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC35.19■■■■□ 3.22
SHROOM4Q9ULL8 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC35.19■■■■□ 3.22
SHROOM4Q9ULL8 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC35.19■■■■□ 3.22
SHROOM4Q9ULL8 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 AP005901.3-202ENST00000581653 237 ntBASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
SHROOM4Q9ULL8 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 FABP5-202ENST00000396359 986 ntTSL 5 BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 AC140113.2-201ENST00000604370 208 ntBASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 AL049812.1-201ENST00000432563 2267 ntBASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC35.17■■■■□ 3.22
SHROOM4Q9ULL8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
SHROOM4Q9ULL8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC35.16■■■■□ 3.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms