Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX3Q9UBR4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.7■□□□□ 0.58
LHX3Q9UBR4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX3Q9UBR4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.7■□□□□ 0.58
LHX3Q9UBR4 AC126763.1-201ENST00000552015 2118 ntBASIC18.7■□□□□ 0.58
LHX3Q9UBR4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LHX3Q9UBR4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX3Q9UBR4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 LINC01311-201ENST00000565162 1445 ntBASIC18.69■□□□□ 0.58
LHX3Q9UBR4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 ARMC10P1-201ENST00000313754 855 ntBASIC18.69■□□□□ 0.58
LHX3Q9UBR4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 AC087388.1-201ENST00000571370 1112 ntBASIC18.69■□□□□ 0.58
LHX3Q9UBR4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 AC004408.2-201ENST00000623613 2777 ntBASIC18.69■□□□□ 0.58
LHX3Q9UBR4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX3Q9UBR4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 AL391807.1-203ENST00000604392 2365 ntBASIC18.68■□□□□ 0.58
LHX3Q9UBR4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 MIR149-201ENST00000384879 89 ntBASIC18.68■□□□□ 0.58
LHX3Q9UBR4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 AC009065.1-201ENST00000564055 1225 ntBASIC18.68■□□□□ 0.58
LHX3Q9UBR4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 AL136038.4-201ENST00000603606 1261 ntBASIC18.68■□□□□ 0.58
LHX3Q9UBR4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 AC005082.1-201ENST00000413042 2259 ntBASIC18.68■□□□□ 0.58
LHX3Q9UBR4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LHX3Q9UBR4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 AC099343.3-201ENST00000605834 2503 ntBASIC18.67■□□□□ 0.58
LHX3Q9UBR4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 HLA-F-220ENST00000434407 884 ntBASIC18.67■□□□□ 0.58
LHX3Q9UBR4 PVRIG2P-201ENST00000435460 978 ntBASIC18.67■□□□□ 0.58
LHX3Q9UBR4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 VENTXP5-201ENST00000523979 775 ntBASIC18.67■□□□□ 0.58
LHX3Q9UBR4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 AL138781.2-201ENST00000617896 1843 ntBASIC18.67■□□□□ 0.58
LHX3Q9UBR4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LHX3Q9UBR4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 AC009102.3-201ENST00000623118 1491 ntBASIC18.66■□□□□ 0.58
LHX3Q9UBR4 SDHAP2-201ENST00000455183 2001 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms