Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
TTC28Q96AY4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TTC28Q96AY4 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TTC28Q96AY4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.8■□□□□ 0.6
TTC28Q96AY4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.8■□□□□ 0.6
TTC28Q96AY4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TTC28Q96AY4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.8■□□□□ 0.6
TTC28Q96AY4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.8■□□□□ 0.6
TTC28Q96AY4 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TTC28Q96AY4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TTC28Q96AY4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
TTC28Q96AY4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TTC28Q96AY4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.8■□□□□ 0.6
TTC28Q96AY4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 AC136632.2-201ENST00000512891 861 ntBASIC18.79■□□□□ 0.6
TTC28Q96AY4 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 GPR89P-201ENST00000407924 1495 ntBASIC18.79■□□□□ 0.6
TTC28Q96AY4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TTC28Q96AY4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
TTC28Q96AY4 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 VN2R19P-201ENST00000442399 1052 ntBASIC18.78■□□□□ 0.6
TTC28Q96AY4 ACTG1P14-201ENST00000446382 1122 ntBASIC18.78■□□□□ 0.6
TTC28Q96AY4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 IGHV3-71-201ENST00000523324 359 ntBASIC18.78■□□□□ 0.6
TTC28Q96AY4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 MTDHP4-201ENST00000600287 670 ntBASIC18.78■□□□□ 0.6
TTC28Q96AY4 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.78■□□□□ 0.6
TTC28Q96AY4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.78■□□□□ 0.6
TTC28Q96AY4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TTC28Q96AY4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
TTC28Q96AY4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TTC28Q96AY4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TTC28Q96AY4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.77■□□□□ 0.6
TTC28Q96AY4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.77■□□□□ 0.6
TTC28Q96AY4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TTC28Q96AY4 SLC25A6P5-201ENST00000435663 894 ntBASIC18.77■□□□□ 0.6
TTC28Q96AY4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.77■□□□□ 0.6
TTC28Q96AY4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TTC28Q96AY4 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.77■□□□□ 0.6
TTC28Q96AY4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TTC28Q96AY4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
TTC28Q96AY4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.77■□□□□ 0.59
TTC28Q96AY4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TTC28Q96AY4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
TTC28Q96AY4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.77■□□□□ 0.59
TTC28Q96AY4 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TTC28Q96AY4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 AC004945.1-201ENST00000416738 983 ntBASIC18.76■□□□□ 0.59
TTC28Q96AY4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TTC28Q96AY4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TTC28Q96AY4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TTC28Q96AY4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TTC28Q96AY4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TTC28Q96AY4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms