Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 RCC2P6-201ENST00000526625 1557 ntBASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 FAM201B-201ENST00000458407 597 ntBASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP4Q8N3C7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 AC008040.2-201ENST00000461049 708 ntBASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 AF186192.3-201ENST00000583427 947 ntBASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 AL359736.2-201ENST00000621992 437 ntBASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CLIP4Q8N3C7 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLIP4Q8N3C7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLIP4Q8N3C7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLIP4Q8N3C7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.39■□□□□ 0.38
CLIP4Q8N3C7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLIP4Q8N3C7 KRT16P1-201ENST00000399124 1418 ntBASIC17.39■□□□□ 0.38
CLIP4Q8N3C7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.39■□□□□ 0.38
CLIP4Q8N3C7 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 AC004951.3-201ENST00000418645 1148 ntBASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP4Q8N3C7 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms