Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 RCN1P1-201ENST00000400413 996 ntBASIC18.15■□□□□ 0.5
VRK3Q8IV63 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 SEC1P-202ENST00000473944 940 ntBASIC18.15■□□□□ 0.5
VRK3Q8IV63 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.15■□□□□ 0.5
VRK3Q8IV63 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VRK3Q8IV63 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
VRK3Q8IV63 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
VRK3Q8IV63 AC073592.3-201ENST00000625118 1834 ntBASIC18.14■□□□□ 0.5
VRK3Q8IV63 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 NEK4P2-201ENST00000580004 1012 ntBASIC18.14■□□□□ 0.49
VRK3Q8IV63 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VRK3Q8IV63 AC090164.3-201ENST00000610780 2143 ntBASIC18.14■□□□□ 0.49
VRK3Q8IV63 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.14■□□□□ 0.49
VRK3Q8IV63 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 NEFHP1-201ENST00000412845 2629 ntBASIC18.13■□□□□ 0.49
VRK3Q8IV63 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.13■□□□□ 0.49
VRK3Q8IV63 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 MYC-208ENST00000641036 567 ntBASIC18.13■□□□□ 0.49
VRK3Q8IV63 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 290.4 ms