Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS13CQ709C8 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13CQ709C8 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS13CQ709C8 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13CQ709C8 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13CQ709C8 AC027601.4-201ENST00000611259 610 ntBASIC15.47■□□□□ 0.07
VPS13CQ709C8 IGHV3-41-201ENST00000613121 348 ntBASIC15.47■□□□□ 0.07
VPS13CQ709C8 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 AC004817.3-201ENST00000602957 2129 ntBASIC15.46■□□□□ 0.07
VPS13CQ709C8 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS13CQ709C8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13CQ709C8 AL049812.1-201ENST00000432563 2267 ntBASIC15.46■□□□□ 0.06
VPS13CQ709C8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13CQ709C8 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13CQ709C8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
VPS13CQ709C8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13CQ709C8 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VPS13CQ709C8 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.46■□□□□ 0.06
VPS13CQ709C8 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
VPS13CQ709C8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 HOXB1-202ENST00000577092 1414 ntBASIC15.45■□□□□ 0.06
VPS13CQ709C8 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 AL499627.1-201ENST00000569373 2188 ntBASIC15.45■□□□□ 0.06
VPS13CQ709C8 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 AC006333.2-201ENST00000607957 2099 ntBASIC15.45■□□□□ 0.06
VPS13CQ709C8 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS13CQ709C8 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.45■□□□□ 0.06
VPS13CQ709C8 GPR32P1-201ENST00000601788 811 ntBASIC15.45■□□□□ 0.06
VPS13CQ709C8 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 MINOS1P3-201ENST00000457048 203 ntBASIC15.44■□□□□ 0.06
VPS13CQ709C8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 AC005336.2-201ENST00000593183 939 ntBASIC15.44■□□□□ 0.06
VPS13CQ709C8 AC134684.3-201ENST00000641758 218 ntBASIC15.44■□□□□ 0.06
VPS13CQ709C8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 FP475955.4-201ENST00000623131 1990 ntBASIC15.44■□□□□ 0.06
VPS13CQ709C8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13CQ709C8 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 KRT8P7-201ENST00000533003 1432 ntBASIC15.44■□□□□ 0.06
VPS13CQ709C8 AC104109.2-201ENST00000602919 1418 ntBASIC15.44■□□□□ 0.06
VPS13CQ709C8 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13CQ709C8 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms