Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLCN3P51790 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.4■□□□□ 0.86
CLCN3P51790 KRT8P26-201ENST00000534154 1276 ntBASIC20.4■□□□□ 0.86
CLCN3P51790 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCN3P51790 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.4■□□□□ 0.86
CLCN3P51790 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
CLCN3P51790 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCN3P51790 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCN3P51790 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLCN3P51790 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLCN3P51790 Z83836.1-201ENST00000624605 1642 ntBASIC20.39■□□□□ 0.86
CLCN3P51790 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.39■□□□□ 0.85
CLCN3P51790 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.39■□□□□ 0.85
CLCN3P51790 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.39■□□□□ 0.85
CLCN3P51790 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 KRT18P41-201ENST00000518924 1277 ntBASIC20.39■□□□□ 0.85
CLCN3P51790 KRT126P-201ENST00000549467 1181 ntBASIC20.39■□□□□ 0.85
CLCN3P51790 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.39■□□□□ 0.85
CLCN3P51790 MIR3180-1-201ENST00000580374 94 ntBASIC20.39■□□□□ 0.85
CLCN3P51790 MIR3180-3-201ENST00000584616 94 ntBASIC20.39■□□□□ 0.85
CLCN3P51790 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCN3P51790 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.39■□□□□ 0.85
CLCN3P51790 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.38■□□□□ 0.85
CLCN3P51790 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.38■□□□□ 0.85
CLCN3P51790 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.38■□□□□ 0.85
CLCN3P51790 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.38■□□□□ 0.85
CLCN3P51790 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.38■□□□□ 0.85
CLCN3P51790 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.38■□□□□ 0.85
CLCN3P51790 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.38■□□□□ 0.85
CLCN3P51790 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.38■□□□□ 0.85
CLCN3P51790 AP003733.1-201ENST00000491725 852 ntBASIC20.38■□□□□ 0.85
CLCN3P51790 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.38■□□□□ 0.85
CLCN3P51790 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.38■□□□□ 0.85
CLCN3P51790 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.38■□□□□ 0.85
CLCN3P51790 AP002414.4-201ENST00000589764 1148 ntBASIC20.38■□□□□ 0.85
CLCN3P51790 AC092329.2-201ENST00000598402 547 ntBASIC20.38■□□□□ 0.85
CLCN3P51790 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.38■□□□□ 0.85
CLCN3P51790 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCN3P51790 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CLCN3P51790 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.37■□□□□ 0.85
CLCN3P51790 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.37■□□□□ 0.85
CLCN3P51790 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CLCN3P51790 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.37■□□□□ 0.85
CLCN3P51790 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.37■□□□□ 0.85
CLCN3P51790 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CLCN3P51790 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.37■□□□□ 0.85
CLCN3P51790 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.37■□□□□ 0.85
CLCN3P51790 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.37■□□□□ 0.85
CLCN3P51790 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.37■□□□□ 0.85
CLCN3P51790 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCN3P51790 AL163051.1-201ENST00000569214 1512 ntBASIC20.37■□□□□ 0.85
CLCN3P51790 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms