Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC21.48■■□□□ 1.03
CTCFP49711 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.48■■□□□ 1.03
CTCFP49711 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.48■■□□□ 1.03
CTCFP49711 AC021087.4-201ENST00000563761 564 ntBASIC21.48■■□□□ 1.03
CTCFP49711 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.48■■□□□ 1.03
CTCFP49711 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CTCFP49711 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
CTCFP49711 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.48■■□□□ 1.03
CTCFP49711 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.48■■□□□ 1.03
CTCFP49711 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CTCFP49711 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.47■■□□□ 1.03
CTCFP49711 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
CTCFP49711 FEM1AP1-201ENST00000431297 1995 ntBASIC21.47■■□□□ 1.03
CTCFP49711 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 CNN2P11-201ENST00000429351 262 ntBASIC21.47■■□□□ 1.03
CTCFP49711 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC21.47■■□□□ 1.03
CTCFP49711 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC21.47■■□□□ 1.03
CTCFP49711 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.47■■□□□ 1.03
CTCFP49711 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.47■■□□□ 1.03
CTCFP49711 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CTCFP49711 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.47■■□□□ 1.03
CTCFP49711 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CTCFP49711 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTCFP49711 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CTCFP49711 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CTCFP49711 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 AC010240.3-201ENST00000607688 395 ntBASIC21.46■■□□□ 1.03
CTCFP49711 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.46■■□□□ 1.03
CTCFP49711 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.46■■□□□ 1.03
CTCFP49711 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CTCFP49711 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTCFP49711 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.03
CTCFP49711 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CTCFP49711 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
CTCFP49711 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTCFP49711 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.45■■□□□ 1.02
CTCFP49711 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.45■■□□□ 1.02
CTCFP49711 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTCFP49711 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CTCFP49711 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.45■■□□□ 1.02
CTCFP49711 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
CTCFP49711 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.45■■□□□ 1.02
CTCFP49711 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC21.45■■□□□ 1.02
CTCFP49711 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.45■■□□□ 1.02
CTCFP49711 AC012640.2-201ENST00000561606 901 ntBASIC21.45■■□□□ 1.02
CTCFP49711 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.45■■□□□ 1.02
CTCFP49711 MIR4469-201ENST00000583919 79 ntBASIC21.45■■□□□ 1.02
CTCFP49711 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CTCFP49711 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CTCFP49711 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.45■■□□□ 1.02
CTCFP49711 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CTCFP49711 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CTCFP49711 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.45■■□□□ 1.02
CTCFP49711 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTCFP49711 KRT8P3-201ENST00000519669 1449 ntBASIC21.45■■□□□ 1.02
CTCFP49711 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.45■■□□□ 1.02
CTCFP49711 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTCFP49711 PLK5-205ENST00000642079 1969 ntBASIC21.45■■□□□ 1.02
CTCFP49711 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTCFP49711 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CTCFP49711 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CTCFP49711 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CTCFP49711 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
CTCFP49711 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CTCFP49711 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CTCFP49711 INIP-202ENST00000374236 874 ntTSL 2 BASIC21.44■■□□□ 1.02
CTCFP49711 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CTCFP49711 UNC93B6-202ENST00000528242 690 ntBASIC21.44■■□□□ 1.02
CTCFP49711 OR7E14P-202ENST00000530490 1290 ntBASIC21.44■■□□□ 1.02
CTCFP49711 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC21.44■■□□□ 1.02
CTCFP49711 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms