Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD3P31249 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD3P31249 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 AL450487.1-201ENST00000426799 995 ntBASIC14.37□□□□□ -0.11
HOXD3P31249 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXD3P31249 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXD3P31249 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD3P31249 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 NEK4P2-201ENST00000580004 1012 ntBASIC14.37□□□□□ -0.11
HOXD3P31249 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD3P31249 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXD3P31249 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXD3P31249 LINC01311-201ENST00000565162 1445 ntBASIC14.37□□□□□ -0.11
HOXD3P31249 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD3P31249 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD3P31249 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
HOXD3P31249 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD3P31249 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
HOXD3P31249 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD3P31249 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HOXD3P31249 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HOXD3P31249 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD3P31249 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD3P31249 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD3P31249 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD3P31249 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD3P31249 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD3P31249 ZNF444P1-201ENST00000559497 298 ntBASIC14.36□□□□□ -0.11
HOXD3P31249 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD3P31249 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD3P31249 AC083849.1-201ENST00000615227 514 ntBASIC14.36□□□□□ -0.11
HOXD3P31249 AC012313.10-201ENST00000623509 926 ntBASIC14.36□□□□□ -0.11
HOXD3P31249 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD3P31249 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
HOXD3P31249 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXD3P31249 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD3P31249 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD3P31249 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXD3P31249 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD3P31249 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD3P31249 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD3P31249 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD3P31249 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HOXD3P31249 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD3P31249 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD3P31249 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
HOXD3P31249 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
HOXD3P31249 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
HOXD3P31249 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD3P31249 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD3P31249 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD3P31249 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXD3P31249 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXD3P31249 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD3P31249 GAD2-202ENST00000376248 680 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD3P31249 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXD3P31249 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXD3P31249 AL136038.3-201ENST00000561909 1096 ntBASIC14.35□□□□□ -0.11
HOXD3P31249 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.35□□□□□ -0.11
HOXD3P31249 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXD3P31249 AC083906.6-201ENST00000641366 219 ntBASIC14.35□□□□□ -0.11
HOXD3P31249 AC068587.9-201ENST00000641814 219 ntBASIC14.35□□□□□ -0.11
HOXD3P31249 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms