Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A1P20908 AC243591.1-201ENST00000452967 1364 ntBASIC17.81■□□□□ 0.44
COL5A1P20908 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A1P20908 POM121L3P-201ENST00000419331 1163 ntBASIC17.81■□□□□ 0.44
COL5A1P20908 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A1P20908 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A1P20908 FAM197Y8-203ENST00000450145 560 ntBASIC17.81■□□□□ 0.44
COL5A1P20908 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A1P20908 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.81■□□□□ 0.44
COL5A1P20908 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.81■□□□□ 0.44
COL5A1P20908 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.81■□□□□ 0.44
COL5A1P20908 AC011840.4-201ENST00000578471 627 ntBASIC17.81■□□□□ 0.44
COL5A1P20908 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A1P20908 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A1P20908 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A1P20908 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A1P20908 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A1P20908 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.8■□□□□ 0.44
COL5A1P20908 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
COL5A1P20908 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
COL5A1P20908 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL5A1P20908 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 KRT18P13-201ENST00000400056 1290 ntBASIC17.8■□□□□ 0.44
COL5A1P20908 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.8■□□□□ 0.44
COL5A1P20908 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.8■□□□□ 0.44
COL5A1P20908 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.8■□□□□ 0.44
COL5A1P20908 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.8■□□□□ 0.44
COL5A1P20908 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.8■□□□□ 0.44
COL5A1P20908 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.8■□□□□ 0.44
COL5A1P20908 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 PCDHAC2-203ENST00000615316 3011 ntBASIC17.8■□□□□ 0.44
COL5A1P20908 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL5A1P20908 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A1P20908 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL5A1P20908 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.79■□□□□ 0.44
COL5A1P20908 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 AL031284.1-201ENST00000419297 478 ntBASIC17.79■□□□□ 0.44
COL5A1P20908 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.79■□□□□ 0.44
COL5A1P20908 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.79■□□□□ 0.44
COL5A1P20908 MINOS1P3-201ENST00000457048 203 ntBASIC17.79■□□□□ 0.44
COL5A1P20908 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.79■□□□□ 0.44
COL5A1P20908 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL5A1P20908 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL5A1P20908 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.79■□□□□ 0.44
COL5A1P20908 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL5A1P20908 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.79■□□□□ 0.44
COL5A1P20908 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.79■□□□□ 0.44
COL5A1P20908 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
COL5A1P20908 AF186996.4-201ENST00000467186 377 ntBASIC17.79■□□□□ 0.44
COL5A1P20908 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
COL5A1P20908 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL5A1P20908 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.79■□□□□ 0.44
COL5A1P20908 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.79■□□□□ 0.44
COL5A1P20908 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A1P20908 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A1P20908 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
COL5A1P20908 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A1P20908 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A1P20908 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A1P20908 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A1P20908 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.78■□□□□ 0.44
COL5A1P20908 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A1P20908 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A1P20908 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A1P20908 RNPS1P1-201ENST00000507437 918 ntBASIC17.78■□□□□ 0.44
COL5A1P20908 AC096582.2-201ENST00000510860 516 ntBASIC17.78■□□□□ 0.44
COL5A1P20908 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.78■□□□□ 0.44
COL5A1P20908 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A1P20908 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.78■□□□□ 0.44
COL5A1P20908 MTMR9LP-203ENST00000426597 1545 ntBASIC17.78■□□□□ 0.44
COL5A1P20908 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A1P20908 HEIH-201ENST00000623091 1652 ntBASIC17.78■□□□□ 0.44
COL5A1P20908 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL5A1P20908 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A1P20908 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A1P20908 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A1P20908 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.77■□□□□ 0.44
COL5A1P20908 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL5A1P20908 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.77■□□□□ 0.44
COL5A1P20908 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.77■□□□□ 0.44
COL5A1P20908 AC145285.3-201ENST00000564603 959 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms